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整合计算机模拟方法以确定内分泌干扰性全氟化学品与类固醇生成急性调节蛋白的结合效力。

Integration of in silico approaches to determination of endocrine-disrupting perfluorinated chemicals binding potency with steroidogenic acute regulatory protein.

作者信息

Kranthi Kumar K, Uma Devi B, Neeraja P

机构信息

Department of Zoology, Sri Venkateswara University, Tirupati, 517502, A.P., India.

Department of Zoology, Sri Venkateswara University, Tirupati, 517502, A.P., India.

出版信息

Biochem Biophys Res Commun. 2017 Sep 30;491(4):1007-1014. doi: 10.1016/j.bbrc.2017.07.168. Epub 2017 Aug 3.

DOI:10.1016/j.bbrc.2017.07.168
PMID:28780348
Abstract

A myriad of perfluorinated compounds (PFCs) have the ability to interfere with steroidogenic acute regulatory (StAR) protein. Consequently, PFCs breaches cholesterol biotransformation in mitochondria and cause fatal consequences in steroidogenesis, however, these were poorly characterized. In the present study, we have evaluated toxic potencies, nuclear mediated probabilities and interaction profiles with StAR of PFCs using computational system biology tools. Toxicity endpoints revealed that PFCs contain high carcinogenicity, developmental toxicity, skin sensitization effects with low mutagenic activity. Consensus qualitative nuclear receptor agonist models show higher probability rates towards ER and PPAR-γ receptor than AR and AhR models were observed. To poise the subtle fluctuations of actual predictions, balanced accuracy and MCC were computed, and they signify perfect correlation ranges in all models. Screening studies resulting protein-ligand interaction profiles showed that residues Asn148, Asn150, Glu169, Ala171, Arg182, Phe184, Arg188, Trp241, Thr263 and Phe267 were identified as novel hotspots, participated in halogen bonds, H-bonds, atomic π-stacking, π-cation interactions and salt-bridges formation. Thus, the additional bonds contribute conformer stability that holds the protein structure at flexible state, so that PFCs acts as a barrier to cholesterol binding. From docking outcomes, representation space was created, that specifies high and medium StAR binders were occupied in toxic endpoints space with active concern. PFCs restrain molecular features and mitochondrial membrane disruption functions were revealed by efficient toxicogenomics studies. These data indicate toxicity and StAR protein binding levels of PFCs, sorted pinpoints could be useful in a promising way to know the other environmental pollutants and health risks.

摘要

大量全氟化合物(PFCs)能够干扰类固醇生成急性调节(StAR)蛋白。因此,PFCs破坏了线粒体中的胆固醇生物转化,并在类固醇生成过程中造成致命后果,然而,这些情况的特征描述并不充分。在本研究中,我们使用计算系统生物学工具评估了PFCs的毒性强度、核介导概率以及与StAR的相互作用特征。毒性终点显示,PFCs具有高致癌性、发育毒性、皮肤致敏作用且诱变活性较低。共识定性核受体激动剂模型显示,与雄激素受体(AR)和芳烃受体(AhR)模型相比,对雌激素受体(ER)和过氧化物酶体增殖物激活受体γ(PPAR-γ)受体的概率更高。为了平衡实际预测的细微波动,计算了平衡准确率和马修斯相关系数(MCC),它们在所有模型中都表示完美的相关范围。筛选研究得出的蛋白质-配体相互作用特征表明,天冬酰胺148、天冬酰胺150、谷氨酸169、丙氨酸171、精氨酸182、苯丙氨酸184、精氨酸188、色氨酸241、苏氨酸263和苯丙氨酸267等残基被确定为新的热点,参与了卤键、氢键、原子π堆积、π-阳离子相互作用和盐桥形成。因此,这些额外的键有助于构象稳定性,使蛋白质结构保持在灵活状态,从而使PFCs成为胆固醇结合的障碍。从对接结果中创建了表示空间,该空间指定了高和中等StAR结合剂在有毒终点空间中受到积极关注。高效的毒理基因组学研究揭示了PFCs抑制分子特征和线粒体膜破坏功能。这些数据表明了PFCs的毒性和与StAR蛋白的结合水平,筛选出的关键点可能有助于以一种有前景的方式了解其他环境污染物和健康风险。

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