Univ. Bordeaux, USC EA 3671 Mycoplasmal and Chlamydial Infections in Humans, Bordeaux, France.
INRA, USC EA 3671 Mycoplasmal and Chlamydial Infections in Humans, Bordeaux, France.
J Clin Microbiol. 2017 Nov;55(11):3194-3200. doi: 10.1128/JCM.00579-17. Epub 2017 Aug 9.
The aim of this study was to evaluate the clinical performance of the Aptima transcription-mediated amplification (MG-TMA) CE-marked for diagnosis (CE-IVD) assay for the detection of in male and female clinical samples in comparison with the in-house real-time PCR (in-house PCR) assay routinely used in our laboratory. A total of 1,431 clinical specimens obtained from 1,235 patients were prospectively collected at the Bacteriology Department of Bordeaux University Hospital (France). Additional research-use-only Aptima transcription-mediated amplification (TMA) assays, Alt1-TMA and Alt2-TMA, were performed on discordant specimens to determine infection status. All confirmed -positive specimens were tested for macrolide resistance using three assays: the in-house 23S rRNA FRET PCR assay, the SpeeDx ResistancePlus MG assay and the nested reverse transcription-PCR (RT-PCR) sequencing assay. The comparison of the MG-TMA assay with the in-house PCR results showed a moderate correlation (kappa value, 0.69). The MG-TMA assay had higher clinical sensitivity compared to that of the in-house PCR assay (100% versus 59.74%, respectively) and similar specificity (99.10% versus 100%, respectively) for detection. In this study, the prevalence of infection was 5.90% (72/1,220 patients). The nested RT-PCR sequencing assay was the most sensitive but the most laborious assay for detecting macrolide-resistance-associated mutations. The prevalence of resistance was 8.33% (6/72). To our knowledge, this is the first clinical evaluation of the MG-TMA CE-IVD assay. The MG-TMA assay performed on the automated Panther system is a very sensitive and specific method for the detection of in clinical specimens.
本研究旨在评估 Aptima 转录介导扩增(MG-TMA)CE 标记诊断(CE-IVD)检测方法在男性和女性临床样本中的临床性能,与本实验室常规使用的内部实时 PCR(in-house PCR)检测方法进行比较。共前瞻性收集了来自 1235 名患者的 1431 份临床标本,来自波尔多大学医院(法国)的细菌学系。对不一致的标本进行额外的研究性使用 Aptima 转录介导扩增(TMA)检测,Alt1-TMA 和 Alt2-TMA,以确定感染状态。使用三种检测方法对所有确证阳性的标本进行大环内酯类耐药性检测:内部 23S rRNA FRET PCR 检测、SpeeDx ResistancePlus MG 检测和巢式逆转录-PCR(RT-PCR)测序检测。MG-TMA 检测与内部 PCR 结果的比较显示出中度相关性(kappa 值,0.69)。与内部 PCR 检测相比,MG-TMA 检测具有更高的临床敏感性(分别为 100%和 59.74%),对的检测具有相似的特异性(分别为 99.10%和 100%)。在这项研究中,感染的流行率为 5.90%(72/1220 名患者)。嵌套 RT-PCR 测序检测是检测大环内酯类耐药相关突变最敏感但最繁琐的检测方法。耐药的流行率为 8.33%(6/72)。据我们所知,这是对 MG-TMA CE-IVD 检测的首次临床评估。在自动化 Panther 系统上进行的 MG-TMA 检测是一种非常敏感和特异的方法,可用于检测临床标本中的。