来自美国阿肯色州2016年腮腺炎病毒基因型G爆发的三个完整基因组序列

Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA.

作者信息

Alkam Duah, Wongsurawat Thidathip, Jenjaroenpun Piroon, Connor Skylar, Hobbs Charlotte, Wassenaar Trudy M, Jun Se-Ran, Nookaew Intawat, Ussery David

机构信息

Department of Biomedical Informatics, College of Medicine, The University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.

Department of Pediatrics, College of Medicine, The University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.

出版信息

Genome Announc. 2017 Aug 10;5(32):e00555-17. doi: 10.1128/genomeA.00555-17.

DOI:10.1128/genomeA.00555-17

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5552971/

Abstract

We present here the complete genome sequences of three mumps virus (MuV) strains isolated from patients who tested positive for the mumps virus during a mumps outbreak in Springdale, AR (USA), in 2016. The virus genomes, sequenced with Oxford Nanopore technology, belong to genotype G and have an average length of 15,342 nucleotides (nt).

摘要

我们在此展示了2016年在美国阿肯色州斯普林代尔市一次腮腺炎疫情期间，从腮腺炎病毒检测呈阳性的患者中分离出的三株腮腺炎病毒（MuV）的完整基因组序列。这些病毒基因组采用牛津纳米孔技术进行测序，属于G基因型，平均长度为15342个核苷酸（nt）。

相似文献

1

Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA.来自美国阿肯色州2016年腮腺炎病毒基因型G爆发的三个完整基因组序列

Genome Announc. 2017 Aug 10;5(32):e00555-17. doi: 10.1128/genomeA.00555-17.

2

Complete genome sequence of mumps viruses isolated from patients with parotitis, pancreatitis and encephalitis in India.从印度腮腺炎、胰腺炎和脑炎患者中分离出的腮腺炎病毒的全基因组序列

Infect Genet Evol. 2016 Apr;39:272-278. doi: 10.1016/j.meegid.2016.02.012. Epub 2016 Feb 11.

3

Mumps in a highly vaccinated Marshallese community in Arkansas, USA: an outbreak report.美国阿肯色州高度接种疫苗的马绍尔人群中的腮腺炎：暴发报告。

Lancet Infect Dis. 2019 Feb;19(2):185-192. doi: 10.1016/S1473-3099(18)30607-8. Epub 2019 Jan 8.

4

[SH and HN Protein Genetic Characterization Analysis of Mumps Virus Isolated in Liaoning Province from 2008 to 2014].[2008年至2014年辽宁省分离的腮腺炎病毒SH和HN蛋白基因特征分析]

Bing Du Xue Bao. 2016 Mar;32(2):179-84.

5

2016-2017 Arkansas mumps outbreak in a close-knit community: Assessment of the economic impact and response strategies.2016-2017 年阿肯色州紧密社区内的流行性腮腺炎爆发：经济影响评估和应对策略。

Vaccine. 2020 Feb 5;38(6):1481-1485. doi: 10.1016/j.vaccine.2019.11.066. Epub 2019 Dec 6.

6

Genomic non-coding regions reveal hidden patterns of mumps virus circulation in Spain, 2005 to 2015.基因组非编码区揭示了 2005 年至 2015 年期间西班牙腮腺炎病毒传播的隐藏模式。

Euro Surveill. 2018 Apr;23(15). doi: 10.2807/1560-7917.ES.2018.23.15.17-00349.

7

Rescue of wild-type mumps virus from a strain associated with recent outbreaks helps to define the role of the SH ORF in the pathogenesis of mumps virus.从与近期暴发相关的一株病毒中拯救出野生型腮腺炎病毒有助于确定 SH ORF 在腮腺炎病毒发病机制中的作用。

Virology. 2011 Aug 15;417(1):126-36. doi: 10.1016/j.virol.2011.05.003. Epub 2011 Jun 14.

8

[Genetic characteristics of mumps virus in China from 2006 to 2008].2006年至2008年中国腮腺炎病毒的遗传特征

Zhongguo Yi Miao He Mian Yi. 2009 Feb;15(1):8-13.

9

A new mumps virus lineage found in the 1995 mumps outbreak in western Switzerland identified by nucleotide sequence analysis of the SH gene.通过对SH基因进行核苷酸序列分析，在瑞士西部1995年腮腺炎疫情中发现了一种新的腮腺炎病毒谱系。

Arch Virol. 1996;141(3-4):733-41. doi: 10.1007/BF01718331.

10

Genetic diversity of mumps virus in oral fluid specimens: application to mumps epidemiological study.口腔液标本中腮腺炎病毒的遗传多样性：在腮腺炎流行病学研究中的应用

J Infect Dis. 2004 Mar 15;189(6):1001-8. doi: 10.1086/382134. Epub 2004 Mar 2.

引用本文的文献

1

Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016.2016 年阿肯色州大规模腮腺炎暴发中腮腺炎病毒的基因组特征。

Infect Genet Evol. 2019 Nov;75:103965. doi: 10.1016/j.meegid.2019.103965. Epub 2019 Jul 15.

2

Selection of Amplification Targets for Rapid Polymorphism Screening in Ebola Virus Outbreaks.埃博拉病毒疫情中快速多态性筛查的扩增靶点选择

Front Microbiol. 2019 Apr 26;10:857. doi: 10.3389/fmicb.2019.00857. eCollection 2019.

本文引用的文献

1

Remembering mumps.铭记腮腺炎。

PLoS Pathog. 2015 May 7;11(5):e1004791. doi: 10.1371/journal.ppat.1004791. eCollection 2015 May.

2

Molecular biology, pathogenesis and pathology of mumps virus.腮腺炎病毒的分子生物学、发病机制与病理学

J Pathol. 2015 Jan;235(2):242-52. doi: 10.1002/path.4445.

3

Rescue of wild-type mumps virus from a strain associated with recent outbreaks helps to define the role of the SH ORF in the pathogenesis of mumps virus.从与近期暴发相关的一株病毒中拯救出野生型腮腺炎病毒有助于确定 SH ORF 在腮腺炎病毒发病机制中的作用。

Virology. 2011 Aug 15;417(1):126-36. doi: 10.1016/j.virol.2011.05.003. Epub 2011 Jun 14.

4

Nucleotide sequence at position 1081 of the hemagglutinin-neuraminidasegene in wild-type strains of mumps virus is the most relevant marker of virulence.腮腺炎病毒野生型毒株血凝素神经氨酸酶基因第1081位的核苷酸序列是最相关的毒力标志物。

J Clin Microbiol. 1998 Dec;36(12):3743-4. doi: 10.1128/JCM.36.12.3743-3744.1998.

文献AI研究员

20分钟写一篇综述，助力文献阅读效率提升50倍。

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

文档翻译

学术文献翻译模型，支持多种主流文档格式。