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细菌靶向搜索的统计特征。

Statistical signatures of a targeted search by bacteria.

作者信息

Jashnsaz Hossein, Anderson Gregory G, Pressé Steve

机构信息

Department of Physics, Indiana University-Purdue University Indianapolis (IUPUI), Indianapolis, IN 46202, United States of America.

出版信息

Phys Biol. 2017 Nov 3;14(6):065002. doi: 10.1088/1478-3975/aa84ea.

DOI:10.1088/1478-3975/aa84ea
PMID:28809162
Abstract

Chemoattractant gradients are rarely well-controlled in nature and recent attention has turned to bacterial chemotaxis toward typical bacterial food sources such as food patches or even bacterial prey. In environments with localized food sources reminiscent of a bacterium's natural habitat, striking phenomena-such as the volcano effect or banding-have been predicted or expected to emerge from chemotactic models. However, in practice, from limited bacterial trajectory data it is difficult to distinguish targeted searches from an untargeted search strategy for food sources. Here we use a theoretical model to identify statistical signatures of a targeted search toward point food sources, such as prey. Our model is constructed on the basis that bacteria use temporal comparisons to bias their random walk, exhibit finite memory and are subject to random (Brownian) motion as well as signaling noise. The advantage with using a stochastic model-based approach is that a stochastic model may be parametrized from individual stochastic bacterial trajectories but may then be used to generate a very large number of simulated trajectories to explore average behaviors obtained from stochastic search strategies. For example, our model predicts that a bacterium's diffusion coefficient increases as it approaches the point source and that, in the presence of multiple sources, bacteria may take substantially longer to locate their first source giving the impression of an untargeted search strategy.

摘要

在自然界中,化学引诱剂梯度很少能得到很好的控制,最近人们的注意力转向了细菌对典型细菌食物来源(如食物斑块甚至细菌猎物)的趋化作用。在具有类似于细菌自然栖息地的局部食物来源的环境中,趋化模型预测或预期会出现诸如火山效应或带状等显著现象。然而,在实践中,从有限的细菌轨迹数据很难区分针对食物来源的有目标搜索和无目标搜索策略。在这里,我们使用一个理论模型来识别针对点源食物(如猎物)的有目标搜索的统计特征。我们的模型基于这样的假设构建:细菌利用时间比较来偏向其随机游动,具有有限记忆,并且受到随机(布朗)运动以及信号噪声的影响。使用基于随机模型的方法的优势在于,随机模型可以根据单个随机细菌轨迹进行参数化,但随后可用于生成大量模拟轨迹,以探索从随机搜索策略获得的平均行为。例如,我们的模型预测,细菌接近点源时其扩散系数会增加,并且在存在多个源的情况下,细菌可能需要长得多的时间来找到其第一个源,给人一种无目标搜索策略的印象。

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