Ueda Masahiro, Shibata Tatsuo
Laboratories for Nanobiology, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.
Biophys J. 2007 Jul 1;93(1):11-20. doi: 10.1529/biophysj.106.100263. Epub 2007 Apr 6.
Single-molecule imaging analysis of chemotactic response in eukaryotic cells has revealed a stochastic nature in the input signals and the signal transduction processes. This leads to a fundamental question about the signaling processes: how does the signaling system operate under stochastic fluctuations or noise? Here, we report a stochastic model of chemotactic signaling in which noise and signal propagation along the transmembrane signaling pathway by chemoattractant receptors can be analyzed quantitatively. The results obtained from this analysis reveal that the second-messenger-production reactions by the receptors generate noisy signals that contain intrinsic noise inherently generated at this reaction and extrinsic noise propagated from the ligand-receptor binding. Such intrinsic and extrinsic noise limits the directional sensing ability of chemotactic cells, which may explain the dependence of chemotactic accuracy on chemical gradients that has been observed experimentally. Our analysis also reveals regulatory mechanisms for signal improvement in the stochastically operating signaling system by analyzing how the SNR of chemotactic signals can be improved on or deteriorated by the stochastic properties of receptors and second-messenger molecules. Theoretical consideration of noisy signal transduction by chemotactic signaling systems can further be applied to signaling systems in general.
真核细胞趋化反应的单分子成像分析揭示了输入信号和信号转导过程的随机性。这引发了一个关于信号传导过程的基本问题:信号系统在随机波动或噪声下如何运作?在此,我们报告了一个趋化信号传导的随机模型,通过该模型可以对趋化因子受体沿跨膜信号通路的噪声和信号传播进行定量分析。从该分析中获得的结果表明,受体产生第二信使的反应会产生有噪声的信号,这些信号包含在此反应中固有产生的内在噪声以及从配体 - 受体结合传播而来的外在噪声。这种内在和外在噪声限制了趋化细胞的方向感知能力,这可能解释了实验中观察到的趋化准确性对化学梯度的依赖性。我们的分析还通过分析趋化信号的信噪比如何因受体和第二信使分子的随机特性而得到改善或恶化,揭示了随机运作的信号系统中信号改善的调节机制。趋化信号传导系统噪声信号转导的理论思考通常还可进一步应用于其他信号系统。