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评估电子结构方法以准确计算氟化氨基酸中的 F 化学位移。

Evaluating electronic structure methods for accurate calculation of F chemical shifts in fluorinated amino acids.

机构信息

Department of Chemistry, Wichita State University, 1845 Fairmount Street, Wichita, Kansas, 67260-0051.

出版信息

J Comput Chem. 2017 Nov 15;38(30):2605-2617. doi: 10.1002/jcc.24919. Epub 2017 Aug 21.

Abstract

The ability of electronic structure methods (11 density functionals, HF, and MP2 calculations; two basis sets and two solvation models) to accurately calculate the F chemical shifts of 31 structures of fluorinated amino acids and analogues with known experimental F NMR spectra has been evaluated. For this task, BHandHLYP, ωB97X, and Hartree-Fock with scaling factors (provided within) are most accurate. Additionally, the accuracy of methods to calculate relative changes in fluorine shielding across 23 sets of structural variants, such as zwitterionic amino acids versus side chains only, was also determined. This latter criterion may be a better indicator of reliable methods for the ultimate goal of assigning and interpreting chemical shifts of fluorinated amino acids in proteins. It was found that MP2 and M062X calculations most accurately assess changes in shielding among analogues. These results serve as a guide for computational developments to calculate F chemical shifts in biomolecular environments. © 2017 Wiley Periodicals, Inc.

摘要

已评估电子结构方法(11 种密度泛函、HF 和 MP2 计算;两种基组和两种溶剂化模型)在准确计算具有已知实验 F NMR 光谱的 31 种氟化氨基酸和类似物的 F 化学位移方面的能力。对于这项任务,BHandHLYP、ωB97X 和内部分子轨道(HF)方法与缩放因子(内部分子轨道)相结合是最准确的。此外,还确定了计算 23 组结构变体(如两性离子氨基酸与仅侧链)中氟屏蔽相对变化的方法的准确性。这一标准可能是评估用于分配和解释蛋白质中氟化氨基酸化学位移的可靠方法的更好指标。结果发现,MP2 和 M062X 计算最能准确评估类似物之间的屏蔽变化。这些结果为计算生物分子环境中 F 化学位移的计算发展提供了指导。© 2017 Wiley Periodicals, Inc.

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