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人类X染色体长臂近端基因座的多点连锁分析:应用于脉络膜缺损基因座的定位

Multipoint linkage analysis of loci in the proximal long arm of the human X chromosome: application to mapping the choroideremia locus.

作者信息

Lesko J G, Lewis R A, Nussbaum R L

出版信息

Am J Hum Genet. 1987 Apr;40(4):303-11.

PMID:2883887
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1684091/
Abstract

Choroideremia (McK30310), an X-linked retinal dystrophy, causes progressive night blindness, visual field constriction, and eventual central blindness in affected males by the third to fourth decade of life. The biochemical basis of the disease is unknown, and prenatal diagnosis is not available. Subregional localization of the choroideremia locus to Xq13-22 was accomplished initially by linkage to two restriction-fragment-length polymorphisms (RFLPs), DXYS1 (Xq13-q21.1) and DXS3 (Xq21.3-22). We have now extended our linkage analysis to 12 families using nine RFLP markers between Xp11.3 and Xq26. Recombination frequencies of 0%-4% were found between choroideremia and five markers (PGK, DXS3, DXYS12, DXS72, and DXYS1) located in Xq13-22. The families were also used to measure recombination frequencies between RFLP loci to provide parameters for the program LINKMAP. Multipoint analysis with LINKMAP provided overwhelming evidence for placing the choroideremia locus within the region bounded by DXS1 (Xq11-13) and DXS17 (Xq21.3-q22). At a finer level of resolution, multipoint analysis suggested that the choroideremia locus was proximal to DXS3 (384:1 odds) rather than distal to it. Data were insufficient, however, to distinguish between a gene order that puts choroideremia between DXS3 and DXYS1 and one that places choroideremia proximal to both RFLP loci. These results provide linkage mapping of choroideremia and RFLP loci in this region that will be of use for further genetic studies as well as for clinical applications in this and other human diseases.

摘要

无脉络膜症(McK30310)是一种X连锁视网膜营养不良症,会导致患病男性在30到40岁时逐渐出现夜盲、视野缩小,最终导致中心性失明。该病的生化基础尚不清楚,目前也无法进行产前诊断。最初通过与两个限制性片段长度多态性(RFLP)标记DXYS1(Xq13 - q21.1)和DXS3(Xq21.3 - 22)连锁,将无脉络膜症基因座亚区域定位到Xq13 - 22。我们现在已将连锁分析扩展到12个家系,使用了位于Xp11.3和Xq26之间的9个RFLP标记。在无脉络膜症与位于Xq13 - 22的5个标记(PGK、DXS3、DXYS12、DXS72和DXYS1)之间发现重组频率为0% - 4%。这些家系还用于测量RFLP基因座之间的重组频率,为LINKMAP程序提供参数。使用LINKMAP进行的多点分析提供了压倒性证据,表明无脉络膜症基因座位于由DXS1(Xq11 - 13)和DXS17(Xq21.3 - q22)界定的区域内。在更高分辨率水平上,多点分析表明无脉络膜症基因座位于DXS3近端(优势比为384:1)而非远端。然而,数据不足以区分使无脉络膜症位于DXS3和DXYS1之间的基因顺序与使无脉络膜症位于两个RFLP基因座近端的基因顺序。这些结果提供了该区域无脉络膜症和RFLP基因座的连锁图谱,将用于进一步的遗传学研究以及该疾病和其他人类疾病的临床应用。

相似文献

1
Multipoint linkage analysis of loci in the proximal long arm of the human X chromosome: application to mapping the choroideremia locus.人类X染色体长臂近端基因座的多点连锁分析:应用于脉络膜缺损基因座的定位
Am J Hum Genet. 1987 Apr;40(4):303-11.
2
Choroideremia is linked to the restriction fragment length polymorphism DXYS1 at XQ13-21.无脉络膜症与位于XQ13 - 21的限制性片段长度多态性DXYS1相关。
Am J Hum Genet. 1985 May;37(3):473-81.
3
Mapping X-linked ophthalmic diseases. Provisional assignment of the locus for choroideremia to Xq13-q24.绘制X连锁眼病图谱。视网膜色素变性基因座暂时定位于Xq13-q24。
Ophthalmology. 1985 Jun;92(6):800-6. doi: 10.1016/s0161-6420(85)33956-8.
4
Regional localization of polymorphic DNA loci on the proximal long arm of the X chromosome using deletions associated with choroideremia.利用与脉络膜缺损相关的缺失对X染色体近端长臂上的多态性DNA位点进行区域定位。
Hum Genet. 1988 Feb;78(2):156-60. doi: 10.1007/BF00278188.
5
Linkage relationships of X-linked choroideremia to DXYS1 and DXS3.
Hum Genet. 1987 Nov;77(3):233-5. doi: 10.1007/BF00284475.
6
Choroideremia: further evidence for assignment of the locus to Xq13-Xq21.无脉络膜症:将该基因座定位于Xq13 - Xq21的进一步证据。
Hum Genet. 1986 Dec;74(4):449-52. doi: 10.1007/BF00280505.
7
Choroideremia-locus maps between DXS3 and DXS11 on Xq.
Hum Genet. 1986 Jun;73(2):123-6. doi: 10.1007/BF00291600.
8
Genetic mapping of nine DNA markers in the q11----q22 region of the human X chromosome.人类X染色体q11----q22区域九个DNA标记的基因定位。
Genomics. 1987 Sep;1(1):60-6. doi: 10.1016/0888-7543(87)90105-4.
9
X-linked hypohidrotic ectodermal dysplasia: localization within the region Xq11-21.1 by linkage analysis and implications for carrier detection and prenatal diagnosis.X连锁低汗性外胚层发育不良:通过连锁分析定位到Xq11 - 21.1区域及其对携带者检测和产前诊断的意义
Am J Hum Genet. 1988 Jul;43(1):75-85.
10
Haplotype and multipoint linkage analysis in Finnish choroideremia families.
Hum Genet. 1989 Dec;84(1):66-70. doi: 10.1007/BF00210674.

引用本文的文献

1
Isolation of anonymous DNA sequences from within a submicroscopic X chromosomal deletion in a patient with choroideremia, deafness, and mental retardation.从一名患有脉络膜视网膜炎、耳聋和智力迟钝患者的亚显微X染色体缺失区域内分离匿名DNA序列。
Proc Natl Acad Sci U S A. 1987 Sep;84(18):6521-5. doi: 10.1073/pnas.84.18.6521.
2
Regional localization of polymorphic DNA loci on the proximal long arm of the X chromosome using deletions associated with choroideremia.利用与脉络膜缺损相关的缺失对X染色体近端长臂上的多态性DNA位点进行区域定位。
Hum Genet. 1988 Feb;78(2):156-60. doi: 10.1007/BF00278188.
3
X-linked hypohidrotic ectodermal dysplasia: localization within the region Xq11-21.1 by linkage analysis and implications for carrier detection and prenatal diagnosis.X连锁低汗性外胚层发育不良:通过连锁分析定位到Xq11 - 21.1区域及其对携带者检测和产前诊断的意义
Am J Hum Genet. 1988 Jul;43(1):75-85.
4
Mapping the gene for X-linked cataracts and microcornea with facial, dental, and skeletal features to Xp22: an appraisal of the Nance-Horan syndrome.将伴有面部、牙齿和骨骼特征的X连锁白内障和小角膜基因定位到Xp22:对南斯-霍兰综合征的评估
Trans Am Ophthalmol Soc. 1989;87:658-728.
5
Haplotype and multipoint linkage analysis in Finnish choroideremia families.
Hum Genet. 1989 Dec;84(1):66-70. doi: 10.1007/BF00210674.
6
X-linked severe combined immunodeficiency: localization within the region Xq13.1-q21.1 by linkage and deletion analysis.X连锁重症联合免疫缺陷:通过连锁和缺失分析定位至Xq13.1-q21.1区域
Am J Hum Genet. 1989 May;44(5):724-30.
7
Choroideremia and deafness with stapes fixation: a contiguous gene deletion syndrome in Xq21.伴有镫骨固定的脉络膜视网膜萎缩症和耳聋:一种Xq21区域的相邻基因缺失综合征
Am J Hum Genet. 1989 Oct;45(4):530-40.
8
Choroideremia associated with an X-autosomal translocation.与X-常染色体易位相关的无脉络膜症
Hum Genet. 1990 Apr;84(5):459-64. doi: 10.1007/BF00195820.
9
Deletions in patients with classical choroideremia vary in size from 45 kb to several megabases.
Am J Hum Genet. 1990 Oct;47(4):622-8.
10
Linkage studies and deletion screening in choroideremia.脉络膜缺损的连锁研究与缺失筛查
J Med Genet. 1990 Aug;27(8):496-8. doi: 10.1136/jmg.27.8.496.

本文引用的文献

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Choroideremia; clinical and genetic aspects.无脉络膜症;临床与遗传学方面
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Am J Hum Genet. 1984 May;36(3):546-64.
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Genetic mapping of the human X chromosome by using restriction fragment length polymorphisms.利用限制性片段长度多态性对人类X染色体进行基因定位。
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Linkage analysis of two cloned DNA sequences flanking the Duchenne muscular dystrophy locus on the short arm of the human X chromosome.对人类X染色体短臂上杜兴氏肌营养不良症基因座两侧的两个克隆DNA序列进行连锁分析。
Nucleic Acids Res. 1983 Apr 25;11(8):2303-12. doi: 10.1093/nar/11.8.2303.
10
Single-copy sequence hybridizes to polymorphic and homologous loci on human X and Y chromosomes.单拷贝序列与人类X和Y染色体上的多态性和同源基因座杂交。
Proc Natl Acad Sci U S A. 1982 Sep;79(17):5352-6. doi: 10.1073/pnas.79.17.5352.