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急性胰腺炎中差异表达细胞外 miRNAs 的筛选和验证。

Screening and validation of differentially expressed extracellular miRNAs in acute pancreatitis.

机构信息

Department of Critical Care Medicine, The First Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang 150001, P.R. China.

Department of General Surgery, The First Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang 150001, P.R. China.

出版信息

Mol Med Rep. 2017 Nov;16(5):6412-6418. doi: 10.3892/mmr.2017.7374. Epub 2017 Aug 28.

Abstract

The present study aimed to screen for differentially expressed extracellular microRNAs (miRNAs) during the development of acute pancreatitis (AP) and validate the miRNA expression in the plasma of patients with AP. The culture medium of taurolithocholic acid‑3 sulfate‑treated rat pancreatic acinar AR42J cells was collected to extract total RNA for miRNA microarray analysis. Compared with the miRNA test results of the AP rats in the GEO databases, the differentially expressed extracellular miRNAs were screened. The TargetScan, miRanda, and PicTar programs were used for target gene prediction of the identified miRNAs, and gene ontology‑biological processes (GO‑BP) functional annotation was performed. Finally, the results from the combined microarray analyses (in vitro cell line and in vivo rat samples) were validated using plasma samples from patients with mild and moderately severe AP by reverse transcription‑polymerase chain reaction. The results demonstrated that extracellular miR‑24 was differentially expressed by microarray and bioinformatics analysis in both the cell line and the animal model of AP. Bioinformatics prediction analysis revealed that downstream target genes of miR‑24 included Vav2, Syk, Lhcgr, Slc9a3r1, Cacnb1, Cacna1b, Bcl10, and Fgd3. Functional enrichment analysis revealed that the main GO‑BP predicted functional presentations were positive regulation of calcium‑mediated signaling, activation of c‑Jun N‑terminal kinase activity, calcium ion transport, regulation of Rho protein signal transduction, negative regulation of the protein kinase B signaling cascade, and the T cell receptor signaling pathway. Validation analysis for the plasma miR‑24 expression in humans revealed a significant upregulation of miR‑24 in the plasma samples of AP patients compared with the healthy controls, while no significant difference was observed in the miR‑24 expression between the mild and the moderately severe AP groups. The present study confirmed the high expression of miR‑24 in peripheral blood during AP, suggesting that miR‑24 might have an intercellular communication role contributing to the AP‑associated distant organ injury.

摘要

本研究旨在筛选急性胰腺炎(AP)发生过程中差异表达的细胞外 microRNAs(miRNAs),并验证 AP 患者血浆中 miRNA 的表达。收集牛磺胆酸-3 硫酸盐处理的大鼠胰腺腺泡 AR42J 细胞培养液以提取 miRNA 微阵列分析用总 RNA。与 GEO 数据库中 AP 大鼠的 miRNA 检测结果进行比较,筛选差异表达的细胞外 miRNAs。使用 TargetScan、miRanda 和 PicTar 程序预测鉴定出的 miRNAs 的靶基因,并进行基因本体论-生物过程(GO-BP)功能注释。最后,通过逆转录-聚合酶链反应(RT-PCR)验证轻度和中度严重 AP 患者血浆样本对体外细胞系和体内大鼠样本联合微阵列分析的结果。结果表明,miR-24 通过细胞系和 AP 动物模型的微阵列和生物信息学分析差异表达。生物信息学预测分析表明,miR-24 的下游靶基因包括 Vav2、Syk、Lhcgr、Slc9a3r1、Cacnb1、Cacna1b、Bcl10 和 Fgd3。功能富集分析表明,预测的主要 GO-BP 功能呈现为钙介导信号的正调控、c-Jun N-末端激酶活性的激活、钙离子转运、Rho 蛋白信号转导的调节、蛋白激酶 B 信号级联的负调控和 T 细胞受体信号通路。对人类血浆 miR-24 表达的验证分析显示,与健康对照组相比,AP 患者血浆样本中 miR-24 显著上调,而轻度和中度严重 AP 组之间 miR-24 表达无显著差异。本研究证实了 miR-24 在 AP 期间外周血中的高表达,表明 miR-24 可能在细胞间通讯中发挥作用,有助于 AP 相关的远处器官损伤。

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