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利用微卫星标记对全球野草莓样本进行群体遗传分析。

Population genetic analysis of a global collection of Fragaria vesca using microsatellite markers.

作者信息

Hilmarsson Hrannar Smári, Hytönen Timo, Isobe Sachiko, Göransson Magnus, Toivainen Tuomas, Hallsson Jón Hallsteinn

机构信息

Faculty of Agricultural and Environmental Sciences, Agricultural University of Iceland, Keldnaholt, Reykjavik, Iceland.

Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland.

出版信息

PLoS One. 2017 Aug 30;12(8):e0183384. doi: 10.1371/journal.pone.0183384. eCollection 2017.

Abstract

The woodland strawberry, Fragaria vesca, holds great promise as a model organism. It not only represents the important Rosaceae family that includes economically important species such as apples, pears, peaches and roses, but it also complements the well-known model organism Arabidopsis thaliana in key areas such as perennial life cycle and the development of fleshy fruit. Analysis of wild populations of A. thaliana has shed light on several important developmental pathways controlling, for example, flowering time and plant growth, suggesting that a similar approach using F. vesca might add to our understanding on the development of rosaceous species and perennials in general. As a first step, 298 F. vesca plants were analyzed using microsatellite markers with the primary aim of analyzing population structure and distribution of genetic diversity. Of the 68 markers tested, 56 were polymorphic, with an average of 4.46 alleles per locus. Our analysis partly confirms previous classification of F. vesca subspecies in North America and suggests two groups within the subsp. bracteata. In addition, F. vesca subsp. vesca forms a single global population with evidence that the Icelandic group is a separate cluster from the main Eurasian population.

摘要

林地草莓(Fragaria vesca)作为一种模式生物具有很大的潜力。它不仅代表了重要的蔷薇科,该科包括苹果、梨、桃子和玫瑰等具有经济重要性的物种,而且在多年生生命周期和肉质果实发育等关键领域补充了著名的模式生物拟南芥。对拟南芥野生种群的分析揭示了一些控制例如开花时间和植物生长的重要发育途径,这表明使用林地草莓的类似方法可能会增进我们对蔷薇科物种和多年生植物总体发育的理解。作为第一步,使用微卫星标记对298株林地草莓植株进行了分析,主要目的是分析种群结构和遗传多样性分布。在所测试的68个标记中,56个是多态性的,每个位点平均有4.46个等位基因。我们的分析部分证实了之前对北美林地草莓亚种的分类,并表明在苞片草莓亚种内存在两个组。此外,野草莓亚种形成了一个单一的全球种群,有证据表明冰岛种群是与主要欧亚种群分开的一个集群。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a090/5576660/618d27f5d920/pone.0183384.g001.jpg

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