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基于 Mtb-KasA 酶的硫霉素衍生物的计算机药物设计以抑制结核分枝杆菌的多药耐药性。

In Silico Drug Design of Thiolactomycin Derivatives Against Mtb-KasA Enzyme to Inhibit Multidrug Resistance of Mycobacterium tuberculosis.

机构信息

Department of Bioinformatics, Bharathiar University, Coimbatore, Tamilnadu, India.

出版信息

Interdiscip Sci. 2019 Jun;11(2):215-225. doi: 10.1007/s12539-017-0257-0. Epub 2017 Aug 30.

DOI:10.1007/s12539-017-0257-0
PMID:28856604
Abstract

Tuberculosis (TB) is a leading infectious disease which kills a huge number of people every year over a decade, caused by Mycobacterium tuberculosis. The conventional drugs in the market are no longer effective due to the increasing mycobacterial resistance to antibiotics. Hence, the need of finding efficient drugs to solve this multiple drug resistant factor is becoming an immediate issue. The first-line drugs in current practice for the treatment of TB emphasize on mycolic acid, which protects the bacteria from an immune response generated by the host. A key enzyme involved in this mycolic acid biosynthesis, M. tuberculosis beta-ketoacyl-ACP synthase A (MTB-KasA) is a prime candidate in this study. Thiolactomycin is a natural product inhibitor has shown good inhibitory activity against MTB-KasA. Hence, several thiolactomycin derivatives collected from the literature were taken for absorption, distribution, metabolism, excretion and toxicity prediction, molecular docking and molecular dynamics simulation studies with MTB-KasA. The in silico drug designing methods used in this study suggests that the thiolactomycin derivatives are having a better binding activity against MTB-KasA and among them the ligand C14 is identified as a promising lead molecule to inhibit multidrug resistance of tuberculosis by showing a long time binding activity.

摘要

结核病(TB)是一种主要的传染病,每年在十年内导致大量人死亡,由结核分枝杆菌引起。由于分枝杆菌对抗生素的耐药性不断增加,市场上的常规药物已不再有效。因此,寻找有效的药物来解决这种多药耐药因素成为当务之急。目前治疗结核病的一线药物侧重于分枝酸,它可以保护细菌免受宿主产生的免疫反应的影响。分枝酸生物合成中的一个关键酶,结核分枝杆菌β-酮酰基-ACP 合酶 A(MTB-KasA)是本研究的主要候选酶。硫乳霉素是一种天然产物抑制剂,对 MTB-KasA 表现出良好的抑制活性。因此,从文献中收集了几种硫乳霉素衍生物进行吸收、分布、代谢、排泄和毒性预测、分子对接和分子动力学模拟研究与 MTB-KasA。本研究中使用的计算机药物设计方法表明,硫乳霉素衍生物对 MTB-KasA 具有更好的结合活性,其中配体 C14 被鉴定为一种有前途的先导分子,可通过长时间的结合活性来抑制结核病的多药耐药性。

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