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盐三甲基季铵铁茂 - 1 - 羧酸盐和共晶体4 - 氨基 - 5 - 氯 - 2,6 - 二甲基嘧啶 - 铁茂 - 1 - 羧酸(1/1)中的超分子结构

Supramolecular architectures in the salt trimethoprimium ferrocene-1-carboxylate and the cocrystal 4-amino-5-chloro-2,6-dimethylpyrimidine-ferrocene-1-carboxylic acid (1/1).

作者信息

Swinton Darious Robert, Thomas Muthiah Packianathan, Perdih Franc

机构信息

School of Chemistry, Bharathidasan University, Tiruchirappalli 620 024, Tamilnadu, India.

Faculty of Chemistry and Chemical Technology, University of Ljubljana, Večna pot 113, PO Box 537, SI-1000 Ljubljana, Slovenia.

出版信息

Acta Crystallogr C Struct Chem. 2017 Sep 1;73(Pt 9):743-748. doi: 10.1107/S2053229617011913. Epub 2017 Aug 18.

DOI:10.1107/S2053229617011913
PMID:28872073
Abstract

In the salt trimethoprimium ferrocenecarboxylate [systematic name: 2,4-diamino-5-(3,4,5-trimethoxybenzyl)pyrimidin-1-ium ferrocene-1-carboxylate], (CHNO)[Fe(CH)(CHO)], (I), of the antibacterial compound trimethoprim, the carboxylate group interacts with the protonated aminopyrimidine group of trimethoprim via two N-H...O hydrogen bonds, generating a robust R(8) ring motif (heterosynthon). However, in the cocrystal 4-amino-5-chloro-2,6-dimethylpyrimidine-ferrocene-1-carboxylic acid (1/1), [Fe(CH)(CHO)]·CHClN, (II), the carboxyl-aminopyrimidine interaction [R(8) motif] is absent. The carboxyl group interacts with the pyrimidine ring via a single O-H...N hydrogen bond. The pyrimidine rings, however, form base pairs via a pair of N-H...N hydrogen bonds, generating an R(8) supramolecular homosynthon. In salt (I), the unsubstituted cyclopentadienyl ring is disordered over two positions, with a refined site-occupation ratio of 0.573 (10):0.427 (10). In this study, the two five-membered cyclopentadienyl (Cp) rings of ferrocene are in a staggered conformation, as is evident from the C...Cg...Cg...C pseudo-torsion angles, which are in the range 36.13-37.53° for (I) and 22.58-23.46° for (II). Regarding the Cp ring of the minor component in salt (I), the geometry of the ferrocene ring is in an eclipsed conformation, as is evident from the C...Cg...Cg...C pseudo-torsion angles, which are in the range 79.26-80.94°. Both crystal structures are further stabilized by weak π-π interactions.

摘要

在抗菌化合物甲氧苄啶的羧基二茂铁甲氧苄啶盐[系统名称:2,4-二氨基-5-(3,4,5-三甲氧基苄基)嘧啶-1-鎓二茂铁-1-羧酸盐],(C₁₉H₂₄N₃O₃)[Fe(C₅H₅)(C₅H₄CO₂)],(I)中,羧酸盐基团通过两个N-H...O氢键与甲氧苄啶的质子化氨基嘧啶基团相互作用,形成一个稳定的R(8)环基序(杂合成子)。然而,在共晶体4-氨基-5-氯-2,6-二甲基嘧啶-二茂铁-1-羧酸(1/1),[Fe(C₅H₅)(C₅H₄CO₂)]·C₅H₆ClN,(II)中,不存在羧基-氨基嘧啶相互作用[R(8)基序]。羧基通过单个O-H...N氢键与嘧啶环相互作用。然而,嘧啶环通过一对N-H...N氢键形成碱基对,产生一个R(8)超分子同合成子。在盐(I)中,未取代的环戊二烯基环在两个位置上无序,精修的位点占有率为0.573 (10):0.427 (10)。在本研究中,二茂铁的两个五元环戊二烯基(Cp)环呈交错构象,这从C...Cg...Cg...C伪扭转角可以明显看出,对于(I),该角度在36.1³-37.5³°范围内,对于(II),在22.5⁸-23.4⁶°范围内。关于盐(I)中次要组分的Cp环,二茂铁环的几何形状呈重叠构象,这从C...Cg...Cg...C伪扭转角可以明显看出,该角度在79.2⁶-80.9⁴°范围内。两种晶体结构都通过弱π-π相互作用进一步稳定。

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