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来自弧菌属菌株EJY3的3,6-脱水-L-半乳糖酸环异构酶:结晶及X射线晶体学分析

3,6-Anhydro-L-galactonate cycloisomerase from Vibrio sp. strain EJY3: crystallization and X-ray crystallographic analysis.

作者信息

Lee Saeyoung, Yun Eun Ju, Kim Kyoung Heon, Kim Hye Yeon, Choi In Geol

机构信息

Department of Biotechnology, Korea University Graduate School, Seoul 02841, Republic of Korea.

Protein Structure Group, Korea Basic Science Institute, Ochang, Chungbuk 28119, Republic of Korea.

出版信息

Acta Crystallogr F Struct Biol Commun. 2017 Sep 1;73(Pt 9):511-514. doi: 10.1107/S2053230X17011797. Epub 2017 Aug 21.

Abstract

3,6-Anhydro-L-galactonate cycloisomerase (ACI), which is found in the marine bacterium Vibrio sp. strain EJY3, converts 3,6-anhydro-L-galactonate into 2-keto-3-deoxygalactonate. ACI is a key enzyme in the metabolic pathway of 3,6-anhydro-L-galactose (AHG). Study of AHG metabolism is important for the efficient fermentation of agar and biofuel production, because AHG is a sugar that is non-fermentable by commercial microorganisms. The aci gene from Vibrio sp. strain EJY3 was cloned, and the recombinant protein was overexpressed and crystallized in order to determine the structure and understand the function of the protein. The crystals diffracted to 2.2 Å resolution and belonged to space group P422 or P422, with unit-cell parameters a = b = 87.9, c = 143.5 Å. The Matthews coefficient was 2.3 Å Da, with a solvent content of 47%.

摘要

3,6-脱水-L-半乳糖酸环异构酶(ACI)存在于海洋细菌弧菌属EJY3菌株中,可将3,6-脱水-L-半乳糖酸转化为2-酮-3-脱氧半乳糖酸。ACI是3,6-脱水-L-半乳糖(AHG)代谢途径中的关键酶。由于AHG是一种商业微生物无法发酵的糖类,因此对AHG代谢的研究对于琼脂的高效发酵和生物燃料生产具有重要意义。克隆了弧菌属EJY3菌株的aci基因,并对重组蛋白进行了过量表达和结晶,以确定该蛋白的结构并了解其功能。晶体的衍射分辨率为2.2 Å,属于空间群P422或P422,晶胞参数a = b = 87.9,c = 143.5 Å。马修斯系数为2.3 Å Da,溶剂含量为47%。

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