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通过基因表达谱分析鉴定与去势抵抗性前列腺癌相关的基因。

Identification of genes associated with castration‑resistant prostate cancer by gene expression profile analysis.

机构信息

Department of Urology, The Second Affiliated Hospital, Zhengzhou University, Zhengzhou, Henan 450014, P.R. China.

Department of Gastrointestinal Glands Surgery, The First Affiliated Hospital, Guangxi Medical University, Nanning, Guangxi 530000, P.R. China.

出版信息

Mol Med Rep. 2017 Nov;16(5):6803-6813. doi: 10.3892/mmr.2017.7488. Epub 2017 Sep 13.

Abstract

Prostate cancer (CaP) is a serious and common genital tumor. Generally, men with metastatic CaP can easily develop castration‑resistant prostate cancer (CRPC). However, the pathogenesis and tumorigenic pathways of CRPC remain to be elucidated. The present study performed a comprehensive analysis on the gene expression profile of CRPC in order to determine the pathogenesis and tumorigenic of CRPC. The GSE33316 microarray, which consisted of 5 non‑castrated samples and 5 castrated samples, was downloaded from the gene expression omnibus database. Subsequently, 201 upregulated and 161 downregulated differentially expressed genes (DEGs) were identified using the limma package in R and those genes were classified and annotated by plugin Mcode of Cytoscape. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed using Database for Annotation, Visualization and Integrated Discovery and KEGG Orthology Based Annotation System 2.0 online tools to investigate the function of different gene modules. The BiNGO tool was used to visualize the level of enriched GO terms. Protein‑protein interaction network was constructed using STRING and analyzed with Cytoscape. In conclusion, the present study determined that aldo‑keto reductase 3, cyclin B2, regulator of G protein signaling 2, nuclear factor of activated T‑cells and protein kinase C a may have important roles in the development of CRPC.

摘要

前列腺癌(CaP)是一种严重且常见的生殖系统肿瘤。一般来说,患有转移性 CaP 的男性很容易发展为去势抵抗性前列腺癌(CRPC)。然而,CRPC 的发病机制和肿瘤发生途径仍有待阐明。本研究对 CRPC 的基因表达谱进行了全面分析,以确定 CRPC 的发病机制和肿瘤发生途径。从基因表达综合数据库中下载了包含 5 个未去势样本和 5 个去势样本的 GSE33316 微阵列,然后使用 R 中的 limma 软件包鉴定了 201 个上调和 161 个下调的差异表达基因(DEGs),并使用 Cytoscape 的插件 Mcode 对这些基因进行分类和注释。使用 Database for Annotation, Visualization and Integrated Discovery 和 KEGG Orthology Based Annotation System 2.0 在线工具进行基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路富集分析,以研究不同基因模块的功能。使用 BiNGO 工具可视化富集 GO 术语的水平。使用 STRING 构建蛋白质-蛋白质相互作用网络,并使用 Cytoscape 进行分析。综上所述,本研究确定醛酮还原酶 3、细胞周期蛋白 B2、G 蛋白信号调节因子 2、激活 T 细胞的核因子和蛋白激酶 C a 在 CRPC 的发展中可能具有重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6118/5865838/ff9b71cba353/mmr-16-05-6803-g00.jpg

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