Wei Lei, Yuan Ye, Wang Xiaowo
Department of Automation, Ministry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, Tsinghua University, Beijing 100084, China.
Tsinghua National Laboratory for Information Science and Technology, Beijing 100084, China.
Sheng Wu Gong Cheng Xue Bao. 2017 Mar 25;33(3):372-385. doi: 10.13345/j.cjb.160415.
As the scale of synthetic gene circuits grows with sophisticated functions, rational design appears to be a bottleneck to develop synthetic biological systems. In this review, we summarized the impact of gene expression noise and competition effect on the performance of synthetic gene circuits. We also summarized recent progresses on rational design approaches, such as digital-analog circuits, network topologies design, and information-theory-based optimization approaches. Finally, we discussed future directions for rational design of synthetic gene circuits.
随着合成基因电路规模的扩大以及功能的复杂化,合理设计似乎成为了开发合成生物系统的一个瓶颈。在本综述中,我们总结了基因表达噪声和竞争效应对合成基因电路性能的影响。我们还总结了合理设计方法的最新进展,如数字 - 模拟电路、网络拓扑设计以及基于信息论的优化方法。最后,我们讨论了合成基因电路合理设计的未来方向。