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本文引用的文献

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A general and flexible method for signal extraction from single-cell RNA-seq data.一种从单细胞RNA测序数据中提取信号的通用且灵活的方法。
Nat Commun. 2018 Jan 18;9(1):284. doi: 10.1038/s41467-017-02554-5.
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Prospective isolation of NKX2-1-expressing human lung progenitors derived from pluripotent stem cells.从多能干细胞中前瞻性分离表达NKX2-1的人肺祖细胞。
J Clin Invest. 2017 Jun 1;127(6):2277-2294. doi: 10.1172/JCI89950. Epub 2017 May 2.
3
Thyroid Progenitors Are Robustly Derived from Embryonic Stem Cells through Transient, Developmental Stage-Specific Overexpression of Nkx2-1.甲状腺祖细胞通过Nkx2-1的瞬时、发育阶段特异性过表达从胚胎干细胞中大量衍生而来。
Stem Cell Reports. 2017 Feb 14;8(2):216-225. doi: 10.1016/j.stemcr.2016.12.024. Epub 2017 Feb 2.
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Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R.Scater:R语言中单细胞RNA测序数据的预处理、质量控制、标准化和可视化
Bioinformatics. 2017 Apr 15;33(8):1179-1186. doi: 10.1093/bioinformatics/btw777.
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A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification.维甲酸-刺猬信号级联在肺特化过程中协调中胚层诱导信号和内胚层能力。
Cell Rep. 2016 Jun 28;16(1):66-78. doi: 10.1016/j.celrep.2016.05.060. Epub 2016 Jun 16.
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Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.跨细胞合并以对具有大量零计数的单细胞RNA测序数据进行标准化。
Genome Biol. 2016 Apr 27;17:75. doi: 10.1186/s13059-016-0947-7.
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Regeneration of Thyroid Function by Transplantation of Differentiated Pluripotent Stem Cells.通过分化的多能干细胞移植实现甲状腺功能的再生
Cell Stem Cell. 2015 Nov 5;17(5):527-42. doi: 10.1016/j.stem.2015.09.004. Epub 2015 Oct 22.
8
New markers for tracking endoderm induction and hepatocyte differentiation from human pluripotent stem cells.用于追踪人多能干细胞向内胚层诱导及肝细胞分化的新标志物。
Development. 2015 Dec 15;142(24):4253-65. doi: 10.1242/dev.121020. Epub 2015 Oct 22.
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Disruption of β-catenin/CBP signaling inhibits human airway epithelial-mesenchymal transition and repair.β-连环蛋白/CBP信号通路的破坏会抑制人气道上皮-间质转化及修复。
Int J Biochem Cell Biol. 2015 Nov;68:59-69. doi: 10.1016/j.biocel.2015.08.014. Epub 2015 Aug 24.
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Claudins: Gatekeepers of lung epithelial function.紧密连接蛋白:肺上皮功能的守门人。
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多能干细胞分化揭示了调节肺与甲状腺谱系特化的不同发育途径。

Pluripotent stem cell differentiation reveals distinct developmental pathways regulating lung- versus thyroid-lineage specification.

作者信息

Serra Maria, Alysandratos Konstantinos-Dionysios, Hawkins Finn, McCauley Katherine B, Jacob Anjali, Choi Jinyoung, Caballero Ignacio S, Vedaie Marall, Kurmann Anita A, Ikonomou Laertis, Hollenberg Anthony N, Shannon John M, Kotton Darrell N

机构信息

Center for Regenerative Medicine, Boston University and Boston Medical Center, Boston, MA 02118, USA.

The Pulmonary Center and Department of Medicine, Boston University School of Medicine, Boston, MA 02118, USA.

出版信息

Development. 2017 Nov 1;144(21):3879-3893. doi: 10.1242/dev.150193. Epub 2017 Sep 25.

DOI:10.1242/dev.150193
PMID:28947536
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5702071/
Abstract

The -directed differentiation of pluripotent stem cells (PSCs) through stimulation of developmental signaling pathways can generate mature somatic cell types for basic laboratory studies or regenerative therapies. However, there has been significant uncertainty regarding a method to separately derive lung versus thyroid epithelial lineages, as these two cell types each originate from Nkx2-1 foregut progenitors and the minimal pathways claimed to regulate their distinct lineage specification or have varied in previous reports. Here, we employ PSCs to identify the key minimal signaling pathways (Wnt+BMP versus BMP+FGF) that regulate distinct lung- versus thyroid-lineage specification, respectively, from foregut endoderm. In contrast to most previous reports, these minimal pathways appear to be evolutionarily conserved between mice and humans, and FGF signaling, although required for thyroid specification, unexpectedly appears to be dispensable for lung specification. Once specified, distinct Nkx2-1 lung or thyroid progenitor pools can now be independently derived for functional 3D culture maturation, basic developmental studies or future regenerative therapies.

摘要

通过刺激发育信号通路来定向分化多能干细胞(PSC),可以产生用于基础实验室研究或再生疗法的成熟体细胞类型。然而,关于分别衍生肺上皮谱系和甲状腺上皮谱系的方法一直存在很大的不确定性,因为这两种细胞类型均起源于Nkx2-1前肠祖细胞,且先前报道中声称调节其不同谱系特化的最小信号通路各不相同。在这里,我们利用PSC来确定分别从前肠内胚层调节不同肺谱系和甲状腺谱系特化的关键最小信号通路(Wnt+BMP与BMP+FGF)。与大多数先前的报道不同,这些最小信号通路在小鼠和人类之间似乎在进化上是保守的,并且FGF信号虽然是甲状腺特化所必需的,但出乎意料的是,它对于肺特化似乎是可有可无的。一旦特化,现在就可以独立衍生出不同的Nkx2-1肺或甲状腺祖细胞库,用于功能性3D培养成熟、基础发育研究或未来的再生疗法。