Zhu Yun-Hao, Dong Cheng-Ming, Zheng Qiao-Ke, Feng Wei-Sheng, Liu Meng-Qi, Zhao Le
Collaborative Innovation Center for Respiratory Disease Diagnosis and Treatment & Chinese Medicine Development of Henan Province, School of Pharmacy, Henan University of Traditional Chinese Medicine, Zhengzhou 450046, China.
Zhongguo Zhong Yao Za Zhi. 2017 Jan;42(2):213-219. doi: 10.19540/j.cnki.cjcmm.20161222.037.
In order to explore genetic basis for the biosynthesis of secondary metabolism,the transcriptome of Cornus officinalis was sequenced by the new generation of high-throughput sequencing technology,A total of 96 032 unigenes were assembled with an average length of 590.53 bp. Among them, 35 478 unigenes were annotated in the public databases NR,Swissprot,COG,GO,KOG,Pfam and KEGG. Based on the assignment of KEGG pathway, 84 involved in ridoid biosynthesis and 487 unigenes involved in others secondary metabolites biosynthesis were found. Additionally,53 unigenes and 72 unigenes were predicted to have potential functions of cytochome P450 and UDP- glycosyltransferases based on the annotation result, which may encode responsible for secondary metabolites modification. This study was the first comprehensive transcriptome analysis for C. officinalis, and the candidate genes involved in the biosynthesis of secondary metabolites were obtained. The transcriptome data constitutes a much more abundant genetic resource that can be utilized to benefit further molecular biology studies on C. officinalis.
为了探索次生代谢生物合成的遗传基础,利用新一代高通量测序技术对山茱萸转录组进行测序,共组装得到96032个单基因,平均长度为590.53bp。其中,35478个单基因在公共数据库NR、Swissprot、COG、GO、KOG、Pfam和KEGG中得到注释。基于KEGG通路的注释,发现84个参与环烯醚萜生物合成,487个单基因参与其他次生代谢产物的生物合成。此外,根据注释结果,预测有53个单基因和72个单基因具有细胞色素P450和UDP-糖基转移酶的潜在功能,它们可能编码参与次生代谢产物修饰的相关蛋白。本研究是首次对山茱萸进行全面的转录组分析,并获得了参与次生代谢产物生物合成的候选基因。转录组数据构成了更为丰富的遗传资源,可用于进一步开展山茱萸分子生物学研究。