Scazzocchio Claudio
Department of Microbiology, Imperial College, London, SW7 2AZ UK.
Institut de Génétique et Microbiologie, CNRS UMR 8621, Université Paris-Sud, Orsay, 91405 France.
Fungal Biol Biotechnol. 2014 Oct 14;1:7. doi: 10.1186/s40694-014-0007-6. eCollection 2014.
In this review I give a personal perspective of how fungal biology has changed since I started my Ph. D. in 1963. At that time we were working in the shadow of the birth of molecular biology as an autonomous and reductionistic discipline, embodied in Crick's central dogma. This first period was methodologically characterised by the fact that we knew what genes were, but we could not access them directly. This radically changed in the 70s-80s when gene cloning, reverse genetics and DNA sequencing become possible. The "next generation" sequencing techniques have produced a further qualitative revolutionary change. The ready access to genomes and transcriptomes of any microbial organism allows old questions to be asked in a radically different way and new questions to be approached. I provide examples chosen somewhat arbitrarily to illustrate some of these changes, from applied aspects to fundamental problems such as the origin of fungal specific genes, the evolutionary history of genes clusters and the realisation of the pervasiveness of horizontal transmission. Finally, I address how the ready availability of genomes and transcriptomes could change the status of model organisms.
在这篇综述中,我将从个人角度阐述自1963年我开始攻读博士学位以来真菌生物学的变化情况。那时,我们是在分子生物学作为一门自主的、还原论学科诞生的阴影下开展研究的,这体现在克里克的中心法则中。第一个阶段在方法上的特点是,我们知道基因是什么,但无法直接获取它们。在70年代至80年代,当基因克隆、反向遗传学和DNA测序成为可能时,情况发生了根本性的变化。“下一代”测序技术带来了进一步的质的革命性变化。能够随时获取任何微生物的基因组和转录组,使得旧问题可以用截然不同的方式提出,新问题也能够得以探讨。我随意选取了一些例子来说明其中的一些变化,从应用层面到诸如真菌特定基因的起源、基因簇的进化历史以及水平转移普遍性的认识等基础问题。最后,我将探讨基因组和转录组的随时可得会如何改变模式生物的地位。