Suppr超能文献

结构种群中的运动效应。

Effects of motion in structured populations.

机构信息

Program for Evolutionary Dynamics, Harvard University, One Brattle Square, Suite 6, Cambridge, MA 02138, USA.

Program for Evolutionary Dynamics, Harvard University, One Brattle Square, Suite 6, Cambridge, MA 02138, USA

出版信息

J R Soc Interface. 2017 Oct;14(135). doi: 10.1098/rsif.2017.0509.

Abstract

In evolutionary processes, population structure has a substantial effect on natural selection. Here, we analyse how motion of individuals affects constant selection in structured populations. Motion is relevant because it leads to changes in the distribution of types as mutations march towards fixation or extinction. We describe motion as the swapping of individuals on graphs, and more generally as the shuffling of individuals between reproductive updates. Beginning with a one-dimensional graph, the cycle, we prove that motion suppresses natural selection for death-birth (DB) updating or for any process that combines birth-death (BD) and DB updating. If the rule is purely BD updating, no change in fixation probability appears in the presence of motion. We further investigate how motion affects evolution on the square lattice and weighted graphs. In the case of weighted graphs, we find that motion can be either an amplifier or a suppressor of natural selection. In some cases, whether it is one or the other can be a function of the relative reproductive rate, indicating that motion is a subtle and complex attribute of evolving populations. As a first step towards understanding less restricted types of motion in evolutionary graph theory, we consider a similar rule on dynamic graphs induced by a spatial flow and find qualitatively similar results, indicating that continuous motion also suppresses natural selection.

摘要

在进化过程中,种群结构对自然选择有很大的影响。在这里,我们分析个体运动如何影响结构种群中的持续选择。运动是相关的,因为它导致类型分布的变化,因为突变朝着固定或灭绝前进。我们将运动描述为个体在图上的交换,更一般地说,是个体在生殖更新之间的混合。从一维图,即循环开始,我们证明运动抑制了死亡-出生(DB)更新或任何结合了出生-死亡(BD)和 DB 更新的过程的自然选择。如果规则仅仅是 BD 更新,那么在存在运动的情况下,固定概率不会发生变化。我们进一步研究了运动如何影响正方形晶格和加权图上的进化。在加权图的情况下,我们发现运动可以是自然选择的放大器或抑制器。在某些情况下,它是放大器还是抑制器可以是相对生殖率的函数,这表明运动是进化群体中微妙而复杂的属性。作为理解进化图论中更受限类型运动的第一步,我们考虑了由空间流引起的动态图上的类似规则,并得到了定性上相似的结果,表明连续运动也抑制了自然选择。

相似文献

1
Effects of motion in structured populations.
J R Soc Interface. 2017 Oct;14(135). doi: 10.1098/rsif.2017.0509.
2
Motion, fixation probability and the choice of an evolutionary process.
PLoS Comput Biol. 2019 Aug 5;15(8):e1007238. doi: 10.1371/journal.pcbi.1007238. eCollection 2019 Aug.
3
Evolutionary dynamics on graphs.
Nature. 2005 Jan 20;433(7023):312-6. doi: 10.1038/nature03204.
4
Consolidating birth-death and death-birth processes in structured populations.
PLoS One. 2013;8(1):e54639. doi: 10.1371/journal.pone.0054639. Epub 2013 Jan 28.
5
Fitness dependence of the fixation-time distribution for evolutionary dynamics on graphs.
Phys Rev E. 2019 Jul;100(1-1):012408. doi: 10.1103/PhysRevE.100.012408.
6
Environmental spatial and temporal variability and its role in non-favoured mutant dynamics.
J R Soc Interface. 2019 Aug 30;16(157):20180781. doi: 10.1098/rsif.2018.0781. Epub 2019 Aug 14.
7
Universality of fixation probabilities in randomly structured populations.
Sci Rep. 2014 Oct 27;4:6692. doi: 10.1038/srep06692.
8
Most Undirected Random Graphs Are Amplifiers of Selection for Birth-Death Dynamics, but Suppressors of Selection for Death-Birth Dynamics.
PLoS Comput Biol. 2015 Nov 6;11(11):e1004437. doi: 10.1371/journal.pcbi.1004437. eCollection 2015 Nov.
9
Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs.
PLoS Comput Biol. 2020 Jan 17;16(1):e1007529. doi: 10.1371/journal.pcbi.1007529. eCollection 2020 Jan.
10
Fixation probabilities in graph-structured populations under weak selection.
PLoS Comput Biol. 2021 Feb 2;17(2):e1008695. doi: 10.1371/journal.pcbi.1008695. eCollection 2021 Feb.

引用本文的文献

1
2
Evolutionary dynamics of mutants that modify population structure.
J R Soc Interface. 2023 Nov;20(208):20230355. doi: 10.1098/rsif.2023.0355. Epub 2023 Nov 29.
3
The Moran process on 2-chromatic graphs.
PLoS Comput Biol. 2020 Nov 5;16(11):e1008402. doi: 10.1371/journal.pcbi.1008402. eCollection 2020 Nov.
4
Motion, fixation probability and the choice of an evolutionary process.
PLoS Comput Biol. 2019 Aug 5;15(8):e1007238. doi: 10.1371/journal.pcbi.1007238. eCollection 2019 Aug.
5
Fixation probabilities in weakly compressible fluid flows.
Proc Natl Acad Sci U S A. 2019 Jan 8;116(2):373-378. doi: 10.1073/pnas.1812829116. Epub 2018 Dec 26.
6
Stirring does not make populations well mixed.
Sci Rep. 2018 Mar 6;8(1):4068. doi: 10.1038/s41598-018-22062-w.

本文引用的文献

1
Evolutionary dynamics on any population structure.
Nature. 2017 Apr 13;544(7649):227-230. doi: 10.1038/nature21723. Epub 2017 Mar 29.
2
Amplification on Undirected Population Structures: Comets Beat Stars.
Sci Rep. 2017 Mar 6;7(1):82. doi: 10.1038/s41598-017-00107-w.
3
Detecting the Collapse of Cooperation in Evolving Networks.
Sci Rep. 2016 Aug 5;6:30845. doi: 10.1038/srep30845.
4
Targeted Cooperative Actions Shape Social Networks.
PLoS One. 2016 Jan 29;11(1):e0147850. doi: 10.1371/journal.pone.0147850. eCollection 2016.
5
Cellular cooperation with shift updating and repulsion.
Sci Rep. 2015 Nov 25;5:17147. doi: 10.1038/srep17147.
6
Most Undirected Random Graphs Are Amplifiers of Selection for Birth-Death Dynamics, but Suppressors of Selection for Death-Birth Dynamics.
PLoS Comput Biol. 2015 Nov 6;11(11):e1004437. doi: 10.1371/journal.pcbi.1004437. eCollection 2015 Nov.
7
Modeling Invasion Dynamics with Spatial Random-Fitness Due to Micro-Environment.
PLoS One. 2015 Oct 28;10(10):e0140234. doi: 10.1371/journal.pone.0140234. eCollection 2015.
8
Modes of migration and multilevel selection in evolutionary multiplayer games.
J Theor Biol. 2015 Dec 21;387:144-53. doi: 10.1016/j.jtbi.2015.09.027. Epub 2015 Oct 9.
9
A spatial model predicts that dispersal and cell turnover limit intratumour heterogeneity.
Nature. 2015 Sep 10;525(7568):261-4. doi: 10.1038/nature14971. Epub 2015 Aug 26.
10
Fixation probabilities on superstars, revisited and revised.
J Theor Biol. 2015 Oct 7;382:44-56. doi: 10.1016/j.jtbi.2015.06.029. Epub 2015 Jun 27.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验