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鲍曼不动杆菌 A1296(ST1469)的完整基因组序列,其中含有一个小型质粒,携带有 tet(39) 四环素有抗药性基因。

Complete genome sequence of Acinetobacter baumannii A1296 (ST1469) with a small plasmid harbouring the tet(39) tetracycline resistance gene.

机构信息

Department of Infectious Diseases, Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University, Hangzhou, Zhejiang 310016, China; Key Laboratory of Microbial Technology and Bioinformatics of Zhejiang Province, Hangzhou, China.

State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Biotechnology, Beijing 100071, China.

出版信息

J Glob Antimicrob Resist. 2017 Dec;11:105-107. doi: 10.1016/j.jgar.2017.09.020. Epub 2017 Oct 7.

Abstract

OBJECTIVES

Acinetobacter baumannii is considered an important nosocomial pathogen worldwide owing to its increasing antibiotic resistance. This study aimed to determine the complete genome sequence of A. baumannii strain A1296 and to perform a comparative analysis among A. baumannii.

METHODS

The complete genome sequence of A. baumannii A1296 was sequenced on two SMRT cells using P6C4 chemistry on a PacBio Single Molecule, Real-Time (SMRT) RS II instrument. The A1296 genome sequence was annotated using Prokaryotic Genome Automatic Annotation Pipeline (PGAAP), and the sequence type and resistance genes of the strain were analysed.

RESULTS

Here we present the complete genome sequence of A. baumannii strain A1296, belonging to a novel sequence type (ST1469) and isolated from patient in China, that was sensitive to multiple antibiotics. The genome of A. baumannii A1296 was 3810701bp in length, including one circular chromosome and two plasmids. The tet(39) resistance gene was located on the small plasmid in this A. baumannii strain.

CONCLUSIONS

The genome sequence of A. baumannii strain A1296 can be used as a reference sequence for comparative analysis aimed at elucidating the acquisition, dissemination and mobilisation of resistance genes among A. baumannii.

摘要

目的

鲍曼不动杆菌由于其不断增加的抗生素耐药性,被认为是一种重要的医院获得性病原体。本研究旨在确定鲍曼不动杆菌 A1296 株的全基因组序列,并对其进行比较分析。

方法

使用 P6C4 化学法在 PacBio 单分子实时(SMRT)RS II 仪器上对 A. baumannii A1296 进行了两个 SMRT 细胞的全基因组测序。使用 Prokaryotic Genome Automatic Annotation Pipeline(PGAAP)对 A1296 基因组序列进行注释,并分析该菌株的序列类型和耐药基因。

结果

我们在此介绍了一株新型序列类型(ST1469)的鲍曼不动杆菌 A1296 的全基因组序列,该菌株从中国患者中分离出来,对多种抗生素敏感。A. baumannii A1296 的基因组长度为 3810701bp,包括一个环状染色体和两个质粒。tet(39)耐药基因位于该鲍曼不动杆菌株的小质粒上。

结论

A. baumannii 菌株 A1296 的基因组序列可用作比较分析的参考序列,旨在阐明鲍曼不动杆菌中耐药基因的获得、传播和转移。

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