CH-1的高质量基因组草图序列，CH-1是一种革兰氏阴性细菌，可代谢植物生长调节化合物2-氮杂次黄嘌呤。
High-Quality Draft Genome Sequence of CH-1, a Gram-Negative Bacterium That Metabolizes 2-Azahypoxanthine, a Plant Growth-Regulating Compound.
作者信息
Choi Jae-Hoon, Sugiura Hikaru, Moriuchi Ryota, Kawagishi Hirokazu, Dohra Hideo
机构信息
Research Institute of Green Science and Technology, Shizuoka University, Shizuoka, Japan.
College of Agriculture, Academic Institute, Shizuoka University, Shizuoka, Japan.
出版信息
Genome Announc. 2017 Oct 12;5(41):e01148-17. doi: 10.1128/genomeA.01148-17.
Abstract
strain CH-1 converts 2-azahypoxnathine to 2-aza-8-oxohypoxanthine, plant growth-regulating compounds, by oxidation. We report here the high-quality draft genome sequence of CH-1. The genome contains 8,065 protein-coding sequences, including several genes possibly involved in metabolizing 2-azahypoxanthine.
摘要
菌株CH-1通过氧化作用将2-氮杂次黄嘌呤转化为植物生长调节化合物2-氮杂-8-氧代次黄嘌呤。我们在此报告CH-1的高质量基因组草图序列。该基因组包含8065个蛋白质编码序列，其中包括几个可能参与2-氮杂次黄嘌呤代谢的基因。
相似文献
1
High-Quality Draft Genome Sequence of CH-1, a Gram-Negative Bacterium That Metabolizes 2-Azahypoxanthine, a Plant Growth-Regulating Compound.CH-1的高质量基因组草图序列，CH-1是一种革兰氏阴性细菌，可代谢植物生长调节化合物2-氮杂次黄嘌呤。
Genome Announc. 2017 Oct 12;5(41):e01148-17. doi: 10.1128/genomeA.01148-17.
2
Draft Genome Sequence of sp. Strain A111, Which Converts 2-Azahypoxanthine to 2-Aza-8-Oxohypoxanthine.能将2-氮杂次黄嘌呤转化为2-氮杂-8-氧代次黄嘌呤的sp.菌株A111的基因组序列草图
Microbiol Resour Announc. 2019 Jul 18;8(29):e00664-19. doi: 10.1128/MRA.00664-19.
3
Bioconversion of AHX to AOH by resting cells of Burkholderia contaminans CH-1.污染伯克霍尔德氏菌CH-1的静止细胞将AHX生物转化为AOH。
Biosci Biotechnol Biochem. 2016 Oct;80(10):2045-50. doi: 10.1080/09168451.2016.1189314. Epub 2016 Jul 7.
4
Comprehensive genome analysis of Burkholderia contaminans SK875, a quorum-sensing strain isolated from the swine.从猪身上分离出的群体感应菌株伯克霍尔德菌SK875的全基因组分析
AMB Express. 2023 Mar 11;13(1):30. doi: 10.1186/s13568-023-01537-8.
5
Draft Genome Sequences of Burkholderia contaminans, a Burkholderia cepacia Complex Species That Is Increasingly Recovered from Cystic Fibrosis Patients.洋葱伯克霍尔德菌复合体成员污染伯克霍尔德菌的基因组序列草图，该菌越来越多地从囊性纤维化患者中分离得到
Genome Announc. 2015 Aug 6;3(4):e00766-15. doi: 10.1128/genomeA.00766-15.
6
Draft Genome Sequence of 293K04B, an Endosymbiont of the Sponge-Derived Fungus .海绵源真菌的内共生菌293K04B的基因组序列草图
Genome Announc. 2017 Nov 9;5(45):e01142-17. doi: 10.1128/genomeA.01142-17.
7
Improved High-Quality Draft Genome Sequence and Annotation of LMG 23361.LMG 23361的高质量基因组草图序列及注释的改进
Genome Announc. 2017 Apr 20;5(16):e00245-17. doi: 10.1128/genomeA.00245-17.
8
Draft Genome Sequences of Burkholderia contaminans FFI-28, a Strain Isolated from a Contaminated Pharmaceutical Solution.从受污染的药物溶液中分离出的菌株洋葱伯克霍尔德菌FFI-28的基因组序列草图
Genome Announc. 2016 Oct 27;4(5):e01177-16. doi: 10.1128/genomeA.01177-16.
9
The first reported case of Burkholderia contaminans in patients with cystic fibrosis in Ireland: from the Sargasso Sea to Irish Children.爱尔兰囊性纤维化患者中首例伯克霍尔德菌污染病例报告：从马尾藻海到爱尔兰儿童。
BMC Pulm Med. 2016 Apr 22;16(1):57. doi: 10.1186/s12890-016-0219-z.
10
Impact of clonally-related Burkholderia contaminans strains in two patients attending an Italian cystic fibrosis centre: a case report.两例意大利囊性纤维化中心患者中与克隆相关的伯克霍尔德菌污染株的影响：病例报告。
BMC Pulm Med. 2019 Aug 29;19(1):164. doi: 10.1186/s12890-019-0923-6.
引用本文的文献
1
Draft Genome Sequence of sp. Strain A111, Which Converts 2-Azahypoxanthine to 2-Aza-8-Oxohypoxanthine.能将2-氮杂次黄嘌呤转化为2-氮杂-8-氧代次黄嘌呤的sp.菌株A111的基因组序列草图
Microbiol Resour Announc. 2019 Jul 18;8(29):e00664-19. doi: 10.1128/MRA.00664-19.
本文引用的文献
1
Improved High-Quality Draft Genome Sequence and Annotation of LMG 23361.LMG 23361的高质量基因组草图序列及注释的改进
Genome Announc. 2017 Apr 20;5(16):e00245-17. doi: 10.1128/genomeA.00245-17.
2
DFAST and DAGA: web-based integrated genome annotation tools and resources.DFAST和DAGA：基于网络的综合基因组注释工具与资源。
Biosci Microbiota Food Health. 2016;35(4):173-184. doi: 10.12938/bmfh.16-003. Epub 2016 Jul 14.
3
Bioconversion of AHX to AOH by resting cells of Burkholderia contaminans CH-1.污染伯克霍尔德氏菌CH-1的静止细胞将AHX生物转化为AOH。
Biosci Biotechnol Biochem. 2016 Oct;80(10):2045-50. doi: 10.1080/09168451.2016.1189314. Epub 2016 Jul 7.
4
Circlator: automated circularization of genome assemblies using long sequencing reads.Circlator：利用长测序读段实现基因组组装的自动化环化
Genome Biol. 2015 Dec 29;16:294. doi: 10.1186/s13059-015-0849-0.
5
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences.BlastKOALA 和 GhostKOALA：KEGG 工具用于基因组和宏基因组序列的功能特征分析。
J Mol Biol. 2016 Feb 22;428(4):726-731. doi: 10.1016/j.jmb.2015.11.006. Epub 2015 Nov 14.
6
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
7
The source of "fairy rings": 2-azahypoxanthine and its metabolite found in a novel purine metabolic pathway in plants.“仙女环”的来源：植物中新的嘌呤代谢途径中发现的 2-氮杂次黄嘌呤及其代谢物。
Angew Chem Int Ed Engl. 2014 Feb 3;53(6):1552-5. doi: 10.1002/anie.201308109. Epub 2014 Jan 8.
8
Data, information, knowledge and principle: back to metabolism in KEGG.数据、信息、知识和原理：回到 KEGG 的代谢途径中。
Nucleic Acids Res. 2014 Jan;42(Database issue):D199-205. doi: 10.1093/nar/gkt1076. Epub 2013 Nov 7.
9
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.Geneious Basic：一个集成和可扩展的桌面软件平台，用于组织和分析序列数据。
Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.
10
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
Zotero 插件