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Feedr和animalnexus.ca:一个配对的R包和用户友好的网络应用程序,用于转换和可视化来自静态站点的动物运动数据。

feedr and animalnexus.ca: A paired R package and user-friendly Web application for transforming and visualizing animal movement data from static stations.

作者信息

LaZerte Stefanie E, Reudink Matthew W, Otter Ken A, Kusack Jackson, Bailey Jacob M, Woolverton Austin, Paetkau Mark, de Jong Adriaan, Hill David J

机构信息

Department of Geography and Environmental StudiesThompson Rivers University Kamloops BC Canada.

Natural Resources and Environmental Studies University of Northern British Columbia Prince George BC Canada.

出版信息

Ecol Evol. 2017 Aug 30;7(19):7884-7896. doi: 10.1002/ece3.3240. eCollection 2017 Oct.

Abstract

Radio frequency identification (RFID) provides a simple and inexpensive approach for examining the movements of tagged animals, which can provide information on species behavior and ecology, such as habitat/resource use and social interactions. In addition, tracking animal movements is appealing to naturalists, citizen scientists, and the general public and thus represents a tool for public engagement in science and science education. Although a useful tool, the large amount of data collected using RFID may quickly become overwhelming. Here, we present an R package (feedr) we have developed for loading, transforming, and visualizing time-stamped, georeferenced data, such as RFID data collected from static logger stations. Using our package, data can be transformed from raw RFID data to visits, presence (regular detections by a logger over time), movements between loggers, displacements, and activity patterns. In addition, we provide several conversion functions to allow users to format data for use in functions from other complementary R packages. Data can also be visualized through static or interactive maps or as animations over time. To increase accessibility, data can be transformed and visualized either through R directly, or through the companion site: http://animalnexus.ca, an online, user-friendly, R-based Shiny Web application. This system can be used by professional and citizen scientists alike to view and study animal movements. We have designed this package to be flexible and to be able to handle data collected from other stationary sources (e.g., hair traps, static very high frequency (VHF) telemetry loggers, observations of marked individuals in colonies or staging sites), and we hope this framework will become a meeting point for science, education, and community awareness of the movements of animals. We aim to inspire citizen engagement while simultaneously enabling robust scientific analysis.

摘要

射频识别(RFID)为监测带标签动物的活动提供了一种简单且成本低廉的方法,这种方法能够提供有关物种行为和生态的信息,例如栖息地/资源利用以及社会互动情况。此外,追踪动物活动吸引着博物学家、公民科学家和普通公众,因此它是公众参与科学及科学教育的一种工具。尽管是一个有用的工具,但使用RFID收集的大量数据可能很快变得难以处理。在此,我们展示一个我们开发的R包(feedr),用于加载、转换和可视化带有时间戳、地理参考的数据,比如从静态记录站收集的RFID数据。使用我们的包,数据可以从原始的RFID数据转换为访问记录、存在情况(记录器随时间的常规检测)、记录器之间的移动、位移以及活动模式。此外,我们提供了几个转换函数,以便用户对数据进行格式化,以便在其他互补的R包的函数中使用。数据还可以通过静态或交互式地图进行可视化,或者随着时间的推移以动画形式展示。为了提高可访问性,可以直接通过R,或者通过配套网站:http://animalnexus.ca(一个在线的、用户友好的、基于R的Shiny网络应用程序)对数据进行转换和可视化。专业科学家和公民科学家都可以使用这个系统来查看和研究动物活动。我们设计这个包时力求灵活,能够处理从其他固定来源收集的数据(例如毛发陷阱、静态甚高频(VHF)遥测记录器、在聚居地或停歇地对有标记个体的观察),并且我们希望这个框架将成为科学、教育以及社区对动物活动认识的交汇点。我们旨在激发公民参与,同时实现强大的科学分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e503/5632613/82c554aaced8/ECE3-7-7884-g001.jpg

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