在 R 中制作交互式复杂热图。
Make Interactive Complex Heatmaps in R.
机构信息
Molecular Precision Oncology Program, National Center for Tumor Diseases (NCT), Im Neuen-heimer Feld 280, 69120 Heidelberg, Germany.
Heidelberg Institute of Stem Cell Technology and Experimental Medicine (HI-STEM), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.
出版信息
Bioinformatics. 2022 Feb 7;38(5):1460-1462. doi: 10.1093/bioinformatics/btab806.
SUMMARY
Heatmap is a powerful visualization method on two-dimensional data to reveal patterns shared by subsets of rows and columns. In this work, we introduce a new R package InteractiveComplexHeatmap that brings interactivity to the widely used ComplexHeatmap package. InteractiveComplexHeatmap is designed with an easy-to-use interface where static complex heatmaps can be directly exported to an interactive Shiny web application only with one additional line of code. InteractiveComplexHeatmap also provides flexible functionalities for integrating interactive heatmap widgets to build more complex and customized Shiny web applications.
AVAILABILITY AND IMPLEMENTATION
The InteractiveComplexHeatmap package and documentations are freely available from the Bioconductor project: https://bioconductor.org/packages/InteractiveComplexHeatmap/. A complete and printer-friendly version of the documentation can also be found in Supplementary File S1.
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
摘要
热图是一种强大的二维数据分析可视化方法，可以揭示行和列子集之间共享的模式。在这项工作中，我们引入了一个新的 R 包 InteractiveComplexHeatmap，它为广泛使用的 ComplexHeatmap 包带来了交互性。InteractiveComplexHeatmap 的设计具有易于使用的界面，只需再添加一行代码，就可以将静态复杂热图直接导出到交互式 Shiny web 应用程序中。InteractiveComplexHeatmap 还提供了灵活的功能，用于集成交互式热图小部件，以构建更复杂和定制化的 Shiny web 应用程序。
可用性和实现
InteractiveComplexHeatmap 包及其文档可从 Bioconductor 项目免费获得：https://bioconductor.org/packages/InteractiveComplexHeatmap/。文档的完整且可打印的版本也可以在补充文件 S1 中找到。
补充信息
补充数据可在 Bioinformatics 在线获得。
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