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关于涉及氨基酸和肽的晶体复合物的X射线研究。十五。L-赖氨酸D-谷氨酸和L-赖氨酸D-天冬氨酸一水合物的晶体结构以及手性对分子聚集的影响。

X-ray studies on crystalline complexes involving amino acids and peptides. XV. Crystal structures of L-lysine D-glutamate and L-lysine D-aspartate monohydrate and the effect of chirality on molecular aggregation.

作者信息

Soman J, Suresh C G, Vijayan M

机构信息

Molecular Biophysics Unit, Indian Institute of Science, Bangalore.

出版信息

Int J Pept Protein Res. 1988 Nov;32(5):352-60.

PMID:2905342
Abstract

L-Lysine D-glutamate crystallizes in the monoclinic space group P2(1) with a = 4.902, b = 30.719, c = 9.679 A, beta = 90 degrees and Z = 4. The crystals of L-lysine D-aspartate monohydrate belong to the orthorhombic space group P2(1)2(1)2(1) with a = 5.458, b = 7.152, c = 36.022 A and Z = 4. The structures were solved by the direct methods and refined to R values of 0.125 and 0.040 respectively for 1412 and 1503 observed reflections. The glutamate complex is highly pseudosymmetric. The lysine molecules in it assume a conformation with the side chain staggered between the alpha-amino and the alpha-carboxylate groups. The interactions of the side chain amino groups of lysine in the two complexes are such that they form infinite sequences containing alternating amino and carboxylate groups. The molecular aggregation in the glutamate complex is very similar to that observed in L-arginine D-aspartate and L-arginine D-glutamate trihydrate, with the formation of double layers consisting of both types of molecules. In contrast to the situation in the other three LD complexes, the unlike molecules in L-lysine D-aspartate monohydrate aggregate into alternating layers as in the case of most LL complexes. The arrangement of molecules in the lysine layer is nearly the same as in L-lysine L-aspartate, with head-to-tail sequences as the central feature. The arrangement of aspartate ions in the layers containing them is, however, somewhat unusual. Thus the comparison between the LL and the LD complexes analyzed so far indicates that the reversal of chirality of one of the components in a complex leads to profound changes in molecular aggregation, but these changes could be of more than one type.

摘要

L-赖氨酸D-谷氨酸以单斜空间群P2(1)结晶,a = 4.902,b = 30.719,c = 9.679 Å,β = 90°,Z = 4。L-赖氨酸D-天冬氨酸一水合物晶体属于正交空间群P2(1)2(1)2(1),a = 5.458,b = 7.152,c = 36.022 Å,Z = 4。通过直接法解析结构,对于1412个和1503个观测反射,精修后的R值分别为0.125和0.040。谷氨酸复合物具有高度的假对称性。其中的赖氨酸分子呈现出一种构象,其侧链在α-氨基和α-羧基之间交错排列。两种复合物中赖氨酸侧链氨基的相互作用使得它们形成了包含交替氨基和羧基的无限序列。谷氨酸复合物中的分子聚集与在L-精氨酸D-天冬氨酸和L-精氨酸D-谷氨酸三水合物中观察到的非常相似,形成了由两种类型分子组成的双层结构。与其他三种LD复合物的情况不同,L-赖氨酸D-天冬氨酸一水合物中的不同分子聚集形成交替层,就像大多数LL复合物那样。赖氨酸层中分子的排列与L-赖氨酸L-天冬氨酸中的几乎相同,以头尾序列为主要特征。然而,含有天冬氨酸离子的层中离子的排列有些不寻常。因此,到目前为止对LL和LD复合物的比较表明,复合物中一个组分手性的反转会导致分子聚集发生深刻变化,但这些变化可能不止一种类型。

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