Laboratory Animal Resources Division, Toxicological Evaluation and Research Department, National Institute of Food and Drug Safety Evaluation, Cheongju, 28159, Republic of Korea.
C&K Genomics, 26 Beobwon-ro 9-gil Bldg. C, #1008 (H business park) Songpa-gu, Seoul, 05836, Republic of Korea.
Sci Rep. 2017 Oct 27;7(1):14217. doi: 10.1038/s41598-017-14196-0.
In inbred mouse lines, there is generally little genetic difference between individuals. This small genetic variability facilitates carrying out research on minute changes of various traits and the gene pool. Also, characterizing the diversity and detecting selective genetic and phenotypic signatures are crucial to understanding the genomic basis of a population and to identify specific patterns of evolutionary change. In this study, we investigated the underlying genetic profiles of a newly developed mouse strain, C57BL/6NKorl (Korl), established through sibling mating over 30 generations. To analyse the distinctive genomic features of Korl mice, we used whole-genome sequencing from six samples, which were compared to those of other C57BL/6N-based mouse strains. Korl strain-specific polymorphisms were identified and signatures of a selective sweep were detected. In particular, the candidate genes related to the increased body weight of the Korl strain were identified. Establishment of the genetic profile of Korl mice can provide insight into the inbreeding-induced changes to the gene pool, and help to establish this strain as a useful model for practical and targeted research purposes.
在近交系小鼠品系中,个体之间通常很少有遗传差异。这种遗传变异性小有助于研究各种性状和基因库的微小变化。此外,对多样性进行特征描述以及检测选择的遗传和表型特征对于理解群体的基因组基础以及识别特定的进化变化模式至关重要。在这项研究中,我们通过 30 多代的同胞交配,研究了一种新开发的小鼠品系 C57BL/6NKorl(Korl)的潜在遗传特征。为了分析 Korl 小鼠的独特基因组特征,我们使用了来自 6 个样本的全基因组测序,并与其他基于 C57BL/6N 的小鼠品系进行了比较。鉴定了 Korl 品系特异性多态性,并检测到了选择清除的特征。特别是,鉴定了与 Korl 品系体重增加相关的候选基因。Korl 小鼠遗传特征的建立可以深入了解近交引起的基因库变化,并有助于将该品系建立为实用和有针对性研究的有用模型。