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通过冷冻电镜快速解析近原子分辨率的病毒衣壳结构。

Rapid increase of near atomic resolution virus capsid structures determined by cryo-electron microscopy.

机构信息

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.

出版信息

J Struct Biol. 2018 Jan;201(1):1-4. doi: 10.1016/j.jsb.2017.10.007. Epub 2017 Oct 27.

Abstract

The recent technological advances in electron microscopes, detectors, as well as image processing and reconstruction software have brought single particle cryo-electron microscopy (cryo-EM) into prominence for determining structures of bio-molecules at near atomic resolution. This has been particularly true for virus capsids, ribosomes, and other large assemblies, which have been the ideal specimens for structural studies by cryo-EM approaches. An analysis of time series metadata of virus structures on the methods of structure determination, resolution of the structures, and size of the virus particles revealed a rapid increase in the virus structures determined by cryo-EM at near atomic resolution since 2010. In addition, the data highlight the median resolution (∼3.0 Å) and size (∼310.0 Å in diameter) of the virus particles determined by X-ray crystallography while no such limits exist for cryo-EM structures, which have a median diameter of 508 Å. Notably, cryo-EM virus structures in the last four years have a median resolution of 3.9 Å. Taken together with minimal sample requirements, not needing diffraction quality crystals, and being able to achieve similar resolutions of the crystal structures makes cryo-EM the method of choice for current and future virus capsid structure determinations.

摘要

近年来电子显微镜、探测器以及图像处理和重建软件方面的技术进步使得单颗粒冷冻电子显微镜(cryo-EM)在近原子分辨率下确定生物分子结构方面变得尤为突出。对于病毒衣壳、核糖体和其他大型组装体来说尤其如此,它们一直是 cryo-EM 方法进行结构研究的理想标本。对病毒结构的时间序列元数据进行分析,这些数据涉及结构测定方法、结构分辨率和病毒颗粒大小,结果表明自 2010 年以来,利用 cryo-EM 以近原子分辨率确定的病毒结构数量迅速增加。此外,数据突出显示了通过 X 射线晶体学确定的病毒颗粒的中位数分辨率(∼3.0 Å)和大小(∼310.0 Å 直径),而 cryo-EM 结构则没有这样的限制,其中位数直径为 508 Å。值得注意的是,过去四年中 cryo-EM 病毒结构的中位数分辨率为 3.9 Å。加上最小的样品要求,不需要衍射质量的晶体,并且能够达到类似的晶体结构分辨率,使得 cryo-EM 成为当前和未来病毒衣壳结构测定的首选方法。

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