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银阴离子与核碱基之间的非常规氢键:尺寸选择阴离子光电子能谱和密度泛函计算

Nonconventional Hydrogen Bonds between Silver Anion and Nucleobases: Size-Selected Anion Photoelectron Spectroscopy and Density Functional Calculations.

作者信息

Wang Peng, Xu Hong-Guang, Cao Guo-Jin, Zhang Wen-Jing, Xu Xi-Ling, Zheng Wei-Jun

机构信息

Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China.

University of Chinese Academy of Sciences , Beijing 100049, China.

出版信息

J Phys Chem A. 2017 Nov 22;121(46):8973-8981. doi: 10.1021/acs.jpca.7b09428. Epub 2017 Nov 9.

DOI:10.1021/acs.jpca.7b09428
PMID:29088541
Abstract

We conducted combined gas-phase anion photoelectron spectroscopy and density functional theory studies on nucleobase-silver complexes. The most probable structures of the nucleobase-Ag complexes were determined by comparing the theoretical calculations with the experimental measurements. The vertical detachment energies (VDEs) of uracil-Ag, thymine-Ag, cytosine-Ag, and guanine-Ag were estimated to be 2.18 ± 0.08, 2.11 ± 0.08, 2.04 ± 0.08, and 2.20 ± 0.08 eV, respectively, based on their photoelectron spectra. Adenine-Ag has two isomers coexisting in the experiment; the experimental VDEs of the two isomers are 2.18 and 2.53 eV, respectively. In the most probable isomers of nucleobases-Ag, uracil, thymine, and cytosine interact with Ag anion via N-H···Ag and C-H···Ag hydrogen bonds, while adenine and guanine interact with Ag anion through two N-H···Ag hydrogen bonds. The N-H···Ag hydrogen bonds can be characterized as medium or strong hydrogen bonds. It is found that binding sites of the Ag anion to the nucleobases are affected by the deprotonation energies and the steric effects of two adjacent X-H groups.

摘要

我们对核碱基 - 银配合物进行了气相阴离子光电子能谱和密度泛函理论相结合的研究。通过将理论计算与实验测量结果进行比较,确定了核碱基 - 银配合物最可能的结构。根据尿嘧啶 - 银、胸腺嘧啶 - 银、胞嘧啶 - 银和鸟嘌呤 - 银的光电子能谱,它们的垂直脱附能(VDEs)分别估计为2.18±0.08、2.11±0.08、2.04±0.08和2.20±0.08电子伏特。腺嘌呤 - 银在实验中有两种异构体共存;这两种异构体的实验VDEs分别为2.18和2.53电子伏特。在核碱基 - 银最可能的异构体中,尿嘧啶、胸腺嘧啶和胞嘧啶通过N - H···Ag和C - H···Ag氢键与银阴离子相互作用,而腺嘌呤和鸟嘌呤通过两个N - H···Ag氢键与银阴离子相互作用。N - H···Ag氢键可被表征为中等或强氢键。研究发现,银阴离子与核碱基的结合位点受去质子化能和两个相邻X - H基团的空间效应影响。

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