从沿海潮滩植物根际分离出的CL-YJ9（DSM 18822）的基因组序列草图
Draft genome sequence of CL-YJ9 (DSM 18822), isolated from the rhizosphere of the coastal tidal-flat plant .
作者信息
Choi Dong Han, Jang Gwang Ii, Lapidus Alla, Copeland Alex, Reddy T B K, Mukherjee Supratim, Huntemann Marcel, Varghese Neha, Ivanova Natalia, Pillay Manoj, Tindall Brian J, Göker Markus, Woyke Tanja, Klenk Hans-Peter, Kyrpides Nikos C, Cho Byung Cheol
机构信息
Marine Ecosystem and Biological Research Center, Korea Institute of Ocean Science and Technology, Ansan, 426-744 Republic of Korea.
Microbial Oceanography Laboratory, School of Earth and Environmental Sciences, and Research Institute of Oceanography, Seoul National University, Gwanak-ro, Gwanak-gu, Seoul, 151-742 Republic of Korea.
出版信息
Stand Genomic Sci. 2017 Oct 30;12:65. doi: 10.1186/s40793-017-0275-x. eCollection 2017.
The genus belongs to the family within the class and was reported in 1997. Currently the genus contains 16 species. CL-YJ9 was isolated from sediment associated with the roots of a plant growing in a tidal flat of Youngjong Island, Korea. The genome of the strain CL-YJ9 was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: KMG project. Here we report the main features of the draft genome of the strain. The 5,364,574 bp long draft genome consists of 58 scaffolds with 4762 protein-coding and 91 RNA genes. Based on the genomic analyses, the strain seems to adapt to osmotic changes by intracellular production as well as extracellular uptake of compatible solutes, such as ectoine and betaine. In addition, the strain has a number of genes to defense against oxygen stresses such as reactive oxygen species and hypoxia.
该属属于纲中的科，于1997年被报道。目前该属包含16个物种。CL-YJ9是从韩国永宗岛潮滩生长的一种植物根部相关沉积物中分离得到的。菌株CL-YJ9的基因组通过“模式菌株基因组百科全书，第一阶段：KMG项目”进行测序。在此我们报告该菌株基因组草图的主要特征。该5364574 bp长的基因组草图由58个支架组成，有4762个蛋白质编码基因和91个RNA基因。基于基因组分析，该菌株似乎通过细胞内合成以及细胞外摄取如四氢嘧啶和甜菜碱等相容性溶质来适应渗透压变化。此外，该菌株有许多基因来抵御氧胁迫，如活性氧和缺氧。
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