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日本冲绳琉球大学内陆地蓝藻的意外高多样性

Unexpected High Diversity of Terrestrial Cyanobacteria from the Campus of the University of the Ryukyus, Okinawa, Japan.

作者信息

Nguyen Xuan Hoa, Sumimoto Shinpei, Suda Shoichiro

机构信息

Graduate School of Engineering and Science, University of the Ryukyus, 1 Senbaru, Nishihara, Okinawa 903-0213, Japan.

Department of Chemistry, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku, Yokohama 223-8522, Japan.

出版信息

Microorganisms. 2017 Nov 7;5(4):69. doi: 10.3390/microorganisms5040069.

Abstract

Terrestrial cyanobacterial strains were isolated from the Nishihara campus of the University of the Ryukyus, Okinawa, Japan. The 13 sampling sites were distributed in a 200 m radius and appeared as dry, blackened stains. From these small areas, 143 cyanobacterial strains were established. The strains were divided into five morphotypes, including unicells, unicells with baeocytes, non-branching filaments, false-branching filaments, and heterocystous strains. From the strains, 105 partial 16S rRNA gene sequences were obtained and could be classified into 30 generic types. Among them, 22 unique strains and over 1100 bps of data were selected for further phylogenetic analyses. These sequences were positioned into six main clades corresponding to cyanobacterial orders: Nostocales, Chroococidiopsidales, Chroococcales, Oscillatoriales, Pleurocapsales, and Synechococcales. Almost all sequences had no identical matching data in GenBank and many of them had no closely related data. These data suggest that the terrestrial cyanobacteria are very divese even within close sampling areas, such as within the campus of the University of the Ryukyus. The established strains are not only important for classification of terrestrial cyanobacteria but also for possible application studies in the future.

摘要

陆生蓝藻菌株是从日本冲绳县琉球大学西原校区分离得到的。13个采样点分布在半径200米的范围内,呈现为干燥的黑色污渍状。从这些小区域中,建立了143株蓝藻菌株。这些菌株被分为五种形态类型,包括单细胞、具包囊体的单细胞、无分支丝状体、假分支丝状体和具异形胞的菌株。从这些菌株中,获得了105个部分16S rRNA基因序列,并可分为30个属类型。其中,选择了22个独特菌株和超过1100个碱基对的数据进行进一步的系统发育分析。这些序列被定位到与蓝藻目相对应的六个主要分支中:念珠藻目、色球藻目、色球藻纲、颤藻目、裂殖壶菌目和聚球藻目。几乎所有序列在GenBank中都没有相同的匹配数据,而且其中许多没有密切相关的数据。这些数据表明,即使在如琉球大学校园内这样的近距离采样区域内,陆生蓝藻也非常多样。所建立的菌株不仅对陆生蓝藻的分类很重要,而且对未来可能的应用研究也很重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92d6/5748578/e88a595513c8/microorganisms-05-00069-g001.jpg

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