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参考修正密度泛函理论的应用:溶剂化自由能的温度和压力依赖性。

Application of reference-modified density functional theory: Temperature and pressure dependences of solvation free energy.

机构信息

Division of Superconducting and Functional Materials, Research Institute for Interdisciplinary Science, Okayama University, 3-1-1 Tsushima-Naka, Kita-ku, Okayama, 700-8530, Japan.

Department of Chemistry, Faculty of Science, Okayama University, 3-1-1 Tsushima-Naka, Kita-ku, Okayama, 700-8530, Japan.

出版信息

J Comput Chem. 2018 Feb 5;39(4):202-217. doi: 10.1002/jcc.25101. Epub 2017 Nov 8.

Abstract

Recently, we proposed a reference-modified density functional theory (RMDFT) to calculate solvation free energy (SFE), in which a hard-sphere fluid was introduced as the reference system instead of an ideal molecular gas. Through the RMDFT, using an optimal diameter for the hard-sphere reference system, the values of the SFE calculated at room temperature and normal pressure were in good agreement with those for more than 500 small organic molecules in water as determined by experiments. In this study, we present an application of the RMDFT for calculating the temperature and pressure dependences of the SFE for solute molecules in water. We demonstrate that the RMDFT has high predictive ability for the temperature and pressure dependences of the SFE for small solute molecules in water when the optimal reference hard-sphere diameter determined for each thermodynamic condition is used. We also apply the RMDFT to investigate the temperature and pressure dependences of the thermodynamic stability of an artificial small protein, chignolin, and discuss the mechanism of high-temperature and high-pressure unfolding of the protein. © 2017 Wiley Periodicals, Inc.

摘要

最近,我们提出了一种参考修正的密度泛函理论(RMDFT)来计算溶剂化自由能(SFE),其中引入硬球流体作为参考系统,而不是理想的分子气体。通过 RMDFT,使用硬球参考系统的最佳直径,可以很好地计算出室温常压下 SFE 的值,与实验测定的 500 多种小分子在水中的 SFE 值一致。在本研究中,我们将 RMDFT 应用于计算溶质分子在水中的 SFE 的温度和压力依赖性。我们证明,当使用为每个热力学条件确定的最佳参考硬球直径时,RMDFT 对小分子在水中的 SFE 的温度和压力依赖性具有很高的预测能力。我们还应用 RMDFT 研究了人工小分子蛋白 chignolin 的热力学稳定性的温度和压力依赖性,并讨论了蛋白质高温高压展开的机制。© 2017 Wiley Periodicals, Inc.

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