Sumi Tomonari, Mitsutake Ayori, Maruyama Yutaka
Department of Chemistry, Faculty of Science, Okayama University, 3-1-1 Tsushima-Naka, Kita-ku, Okayama, 700-8530, Japan.
Department of Physics, Keio University, 3-14-1, Hiyoshi, Kohoku-ku, Yokohama, Kanagawa, 223-8522, Japan.
J Comput Chem. 2015 Jul 5;36(18):1359-69. doi: 10.1002/jcc.23942. Epub 2015 May 31.
The three-dimensional reference interaction site model (3D-RISM) theory, which is one of the most applicable integral equation theories for molecular liquids, overestimates the absolute values of solvation-free-energy (SFE) for large solute molecules in water. To improve the free-energy density functional for the SFE of solute molecules, we propose a reference-modified density functional theory (RMDFT) that is a general theoretical approach to construct the free-energy density functional systematically. In the RMDFT formulation, hard-sphere (HS) fluids are introduced as the reference system instead of an ideal polyatomic molecular gas, which has been regarded as the appropriate reference system of the interaction-site-model density functional theory for polyatomic molecular fluids. We show that using RMDFT with a reference HS system can significantly improve the absolute values of the SFE for a set of neutral amino acid side-chain analogues as well as for 504 small organic molecules.
三维参考相互作用位点模型(3D-RISM)理论是分子液体最适用的积分方程理论之一,它高估了水中大溶质分子的溶剂化自由能(SFE)绝对值。为了改进溶质分子SFE的自由能密度泛函,我们提出了一种参考修正密度泛函理论(RMDFT),这是一种系统构建自由能密度泛函的通用理论方法。在RMDFT公式中,引入硬球(HS)流体作为参考系统,而不是理想的多原子分子气体,理想的多原子分子气体一直被视为多原子分子流体相互作用位点模型密度泛函理论的合适参考系统。我们表明,使用具有参考HS系统的RMDFT可以显著提高一组中性氨基酸侧链类似物以及504个小有机分子的SFE绝对值。