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[F]-AV-1451 tau正电子发射断层扫描(PET)数据部分容积校正的注意事项及代码

Considerations and code for partial volume correcting [F]-AV-1451 tau PET data.

作者信息

Baker Suzanne L, Maass Anne, Jagust William J

机构信息

Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.

Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, United States.

出版信息

Data Brief. 2017 Oct 16;15:648-657. doi: 10.1016/j.dib.2017.10.024. eCollection 2017 Dec.

Abstract

[F]-AV-1451 is a leading tracer used with positron emission tomography (PET) to quantify tau pathology. However, [F]-AV-1451 shows "off target" or non-specific binding, which we define as binding of the tracer in unexpected areas unlikely to harbor aggregated tau based on autopsy literature [1]. Along with caudate, putamen, pallidum and thalamus non-specific binding [2], [3], we have found binding in the superior portion of the cerebellar gray matter, leading us to use inferior cerebellar gray as the reference region. We also addressed binding in the posterior portion of the choroid plexus. PET signal unlikely to be associated with tau also occurs in skull, meninges and soft tissue (see e.g. [4]). We refer to [F]-AV-1451 binding in the skull and meninges as extra-cortical hotspots (ECH) and find them near lateral and medial orbitofrontal, lateral occipital, inferior and middle temporal, superior and inferior parietal, and inferior cerebellar gray matter. Lastly, the choroid plexus also shows non-specific binding that bleeds into hippocampus. We are providing the code (http://www.runmycode.org/companion/view/2798) used to create different regions of interest (ROIs) that we then used to perform Partial Volume Correction (PVC) using the Rousset geometric transfer matrix method (GTM, [5]). This method was used in the companion article, "Comparison of multiple tau-PET measures as biomarkers in aging and Alzheimer's Disease" ([6], DOI 10.1016/j.neuroimage.2017.05.058).

摘要

[F]-AV-1451是一种用于正电子发射断层扫描(PET)以量化tau病理的主要示踪剂。然而,[F]-AV-1451显示出“脱靶”或非特异性结合,我们将其定义为基于尸检文献[1],示踪剂在不太可能含有聚集tau的意外区域的结合。除了尾状核、壳核、苍白球和丘脑的非特异性结合[2,3],我们还发现小脑灰质上部存在结合,这使我们将小脑灰质下部用作参考区域。我们还研究了脉络丛后部的结合情况。PET信号不太可能与tau相关的情况也出现在颅骨、脑膜和软组织中(例如见[4])。我们将颅骨和脑膜中[F]-AV-1451的结合称为皮质外热点(ECH),并在外侧和内侧眶额、枕叶外侧、颞叶下部和中部、顶叶上部和下部以及小脑灰质下部附近发现了它们。最后,脉络丛也显示出非特异性结合,这种结合会渗入海马体。我们提供了用于创建不同感兴趣区域(ROI)的代码(http://www.runmycode.org/companion/view/2798),然后我们使用这些区域通过鲁塞几何传递矩阵方法(GTM,[5])进行部分容积校正(PVC)。该方法用于配套文章《多种tau-PET测量作为衰老和阿尔茨海默病生物标志物的比较》([6],DOI 10.1016/j.neuroimage.2017.05.058)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/681e/5671473/f5e100dc5abe/gr1.jpg

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