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1
Computational protein structure refinement: Almost there, yet still so far to go.
Wiley Interdiscip Rev Comput Mol Sci. 2017 May-Jun;7(3). doi: 10.1002/wcms.1307. Epub 2017 Mar 28.
2
CHARMM36m: an improved force field for folded and intrinsically disordered proteins.
Nat Methods. 2017 Jan;14(1):71-73. doi: 10.1038/nmeth.4067. Epub 2016 Nov 7.
3
Local Protein Structure Refinement via Molecular Dynamics Simulations with locPREFMD.
J Chem Inf Model. 2016 Jul 25;56(7):1304-12. doi: 10.1021/acs.jcim.6b00222. Epub 2016 Jul 13.
4
Assessment of refinement of template-based models in CASP11.
Proteins. 2016 Sep;84 Suppl 1(Suppl 1):260-81. doi: 10.1002/prot.25048. Epub 2016 Jun 15.
5
Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.
Proteins. 2016 Sep;84 Suppl 1(Suppl 1):233-46. doi: 10.1002/prot.24918. Epub 2015 Sep 18.
6
Template based protein structure modeling by global optimization in CASP11.
Proteins. 2016 Sep;84 Suppl 1:221-32. doi: 10.1002/prot.24917. Epub 2015 Sep 14.
7
Protein structure refinement via molecular-dynamics simulations: What works and what does not?
Proteins. 2016 Sep;84 Suppl 1(Suppl 1):282-92. doi: 10.1002/prot.24871. Epub 2015 Aug 17.
8
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Evaluation of predictions in the CASP10 model refinement category.
Proteins. 2014 Feb;82 Suppl 2(Suppl 2):98-111. doi: 10.1002/prot.24377. Epub 2014 Jan 3.
10
GalaxyRefine: Protein structure refinement driven by side-chain repacking.
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W384-8. doi: 10.1093/nar/gkt458. Epub 2013 Jun 3.

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