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本文引用的文献

1
Influence of Protein Scaffold on Side-Chain Transfer Free Energies.蛋白质支架对侧链转移自由能的影响。
Biophys J. 2017 Aug 8;113(3):597-604. doi: 10.1016/j.bpj.2017.06.032.
2
Energetics of side-chain partitioning of β-signal residues in unassisted folding of a transmembrane β-barrel protein.跨膜β桶蛋白非辅助折叠过程中β信号残基侧链分配的能量学
J Biol Chem. 2017 Jul 21;292(29):12351-12365. doi: 10.1074/jbc.M117.789446. Epub 2017 Jun 7.
3
Evolutionary trend toward kinetic stability in the folding trajectory of RNases H.核糖核酸酶H折叠轨迹中向动力学稳定性的进化趋势。
Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13045-13050. doi: 10.1073/pnas.1611781113. Epub 2016 Oct 31.
4
Control of human VDAC-2 scaffold dynamics by interfacial tryptophans is position specific.界面色氨酸对人类电压依赖性阴离子通道2支架动力学的控制具有位置特异性。
Biochim Biophys Acta. 2016 Dec;1858(12):2993-3004. doi: 10.1016/j.bbamem.2016.09.011. Epub 2016 Sep 15.
5
Aromatic Side Chain Water-to-Lipid Transfer Free Energies Show a Depth Dependence across the Membrane Normal.芳香侧链水到脂转移自由能显示出跨膜法向的深度依赖性。
J Am Chem Soc. 2016 Jun 29;138(25):7946-50. doi: 10.1021/jacs.6b03460. Epub 2016 Jun 15.
6
Implications of aromatic-aromatic interactions: From protein structures to peptide models.芳香-芳香相互作用的影响:从蛋白质结构到肽模型
Protein Sci. 2015 Dec;24(12):1920-33. doi: 10.1002/pro.2814. Epub 2015 Oct 7.
7
Juxtamembrane tryptophans have distinct roles in defining the OmpX barrel-micelle boundary and facilitating protein-micelle association.膜旁色氨酸在定义 OmpX 桶状胶束边界和促进蛋白-胶束缔合方面具有不同的作用。
FEBS Lett. 2014 Nov 28;588(23):4464-71. doi: 10.1016/j.febslet.2014.10.017.
8
Differential contribution of tryptophans to the folding and stability of the attachment invasion locus transmembrane β-barrel from Yersinia pestis.色氨酸对鼠疫耶尔森氏菌附着侵袭位点跨膜β桶折叠和稳定性的不同贡献。
Sci Rep. 2014 Sep 30;4:6508. doi: 10.1038/srep06508.
9
Asymmetric contribution of aromatic interactions stems from spatial positioning of the interacting aryl pairs in β-hairpins.芳香相互作用的不对称贡献源于β-发夹中相互作用芳基对的空间定位。
Chembiochem. 2014 Nov 3;15(16):2357-60. doi: 10.1002/cbic.201402340. Epub 2014 Sep 5.
10
Outer membrane β-barrel protein folding is physically controlled by periplasmic lipid head groups and BamA.外膜 β-桶状蛋白折叠在物理上受周质脂头部基团和 BamA 的控制。
Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):5878-83. doi: 10.1073/pnas.1322473111. Epub 2014 Apr 8.

界面色氨酸在膜蛋白能量学中的位置特异性贡献。

Position-Specific contribution of interface tryptophans on membrane protein energetics.

机构信息

Molecular Biophysics Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal 462066, India.

Molecular Biophysics Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal 462066, India.

出版信息

Biochim Biophys Acta Biomembr. 2018 Feb;1860(2):451-457. doi: 10.1016/j.bbamem.2017.11.003. Epub 2017 Nov 9.

DOI:10.1016/j.bbamem.2017.11.003
PMID:29128310
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7115948/
Abstract

Interface tryptophans are key residues that facilitate the folding and stability of membrane proteins. Escherichia coli OmpX possesses two unique interface tryptophans, namely Trp76, which is present at the interface and is solvent-exposed, and Trp140, which is relatively more lipid solvated than Trp76 in symmetric lipid membranes. Here, we address the requirement for tryptophan and the consequences of aromatic amino acid substitutions on the folding and stability of OmpX. Using spectroscopic measurements of OmpX-Trp/Tyr/Phe mutants, we show that the specific mutation W76→Y allows barrel assembly >1.5-fold faster than native OmpX, and increases stability by ~0.4kcalmol. In contrast, mutating W140→F/Y lowers OmpX thermodynamic stability by ~0.4kcalmol, without affecting the folding kinetics. We conclude that the stabilizing effect of tryptophan at the membrane interface can be position-and local environment-specific. We propose that the thermodynamic contributions for interface residues be interpreted with caution.

摘要

界面色氨酸是促进膜蛋白折叠和稳定性的关键残基。大肠杆菌 OmpX 具有两个独特的界面色氨酸,即位于界面上且暴露于溶剂中的 Trp76,以及在对称脂质膜中比 Trp76 更脂溶性的 Trp140。在这里,我们研究了色氨酸的需求以及芳香族氨基酸取代对 OmpX 折叠和稳定性的影响。通过对 OmpX-Trp/Tyr/Phe 突变体的光谱测量,我们表明特定的突变 W76→Y 允许桶组装速度比天然 OmpX 快 1.5 倍以上,并增加了约 0.4kcalmol 的稳定性。相比之下,将 W140→F/Y 突变会降低 OmpX 的热力学稳定性约 0.4kcalmol,而不影响折叠动力学。我们得出结论,色氨酸在膜界面上的稳定作用可能具有位置和局部环境特异性。我们建议谨慎解释界面残基的热力学贡献。