Makwana Kamlesh Madhusudan, Mahalakshmi Radhakrishnan
Molecular Biophysics Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal, Madhya Pradesh 462023 (India).
Chembiochem. 2014 Nov 3;15(16):2357-60. doi: 10.1002/cbic.201402340. Epub 2014 Sep 5.
Isolated aromatic interactions in designed octapeptide β-hairpin scaffolds display a near-universal T-shaped face-to-edge geometry in all positional permutations, with the exception of aryl-Trp interactions. The heterogeneous asymmetric indole ring of Trp competes for a "shielding" face geometry, which lowers the scaffold stability in FtE aryl-Trp pairs. Assessment of the contributions of aryl pairs (in the absence of solvent-driven interactions) to the overall β-hairpin structure reveals the superiority of Trp-Phe and Trp-Tyr contributions over the well-established scaffold stabilization by Trp-Trp.
在设计的八肽β-发夹支架中,孤立的芳香族相互作用在所有位置排列中均呈现出近乎通用的T形面-边几何结构,但芳基-色氨酸相互作用除外。色氨酸的异质不对称吲哚环竞争“屏蔽”面几何结构,这降低了FtE芳基-色氨酸对中支架的稳定性。对芳基对(在不存在溶剂驱动相互作用的情况下)对整体β-发夹结构贡献的评估表明,色氨酸-苯丙氨酸和色氨酸-酪氨酸的贡献优于已确立的色氨酸-色氨酸对支架的稳定作用。