从具有混杂弹头的选择性降解中吸取 PROTAC 设计的经验教训。

Lessons in PROTAC Design from Selective Degradation with a Promiscuous Warhead.

机构信息

Department of Molecular, Cellular, and Developmental Biology, Yale University, 219 Prospect Street, New Haven, CT 06511, USA.

Arvinas, LLC, 5 Science Park, New Haven, CT 06511, USA.

出版信息

Cell Chem Biol. 2018 Jan 18;25(1):78-87.e5. doi: 10.1016/j.chembiol.2017.09.010. Epub 2017 Nov 9.

Abstract

Inhibiting protein function selectively is a major goal of modern drug discovery. Here, we report a previously understudied benefit of small molecule proteolysis-targeting chimeras (PROTACs) that recruit E3 ubiquitin ligases to target proteins for their ubiquitination and subsequent proteasome-mediated degradation. Using promiscuous CRBN- and VHL-recruiting PROTACs that bind >50 kinases, we show that only a subset of bound targets is degraded. The basis of this selectivity relies on protein-protein interactions between the E3 ubiquitin ligase and the target protein, as illustrated by engaged proteins that are not degraded as a result of unstable ternary complexes with PROTAC-recruited E3 ligases. In contrast, weak PROTAC:target protein affinity can be stabilized by high-affinity target:PROTAC:ligase trimer interactions, leading to efficient degradation. This study highlights design guidelines for generating potent PROTACs as well as possibilities for degrading undruggable proteins immune to traditional small-molecule inhibitors.

摘要

选择性抑制蛋白质功能是现代药物发现的主要目标。在这里,我们报告了小分子蛋白水解靶向嵌合体(PROTAC)的一个以前研究较少的益处,它招募 E3 泛素连接酶将靶蛋白泛素化,随后通过蛋白酶体介导降解。使用结合 >50 种激酶的混杂的 CRBN 和 VHL 招募 PROTAC,我们表明只有一部分结合的靶标被降解。这种选择性的基础依赖于 E3 泛素连接酶和靶蛋白之间的蛋白质-蛋白质相互作用,这可以通过与 PROTAC 招募的 E3 连接酶形成不稳定的三元复合物而不被降解的结合蛋白来说明。相比之下,弱的 PROTAC:靶蛋白亲和力可以通过高亲和力的靶蛋白:PROTAC:连接酶三聚体相互作用来稳定,从而导致有效的降解。这项研究强调了产生有效 PROTAC 的设计准则,以及降解对传统小分子抑制剂有抗性的不可成药蛋白的可能性。

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