Pérez-Velázquez Judith, Hense Burkhard A
Mathematical Modeling of Biological Systems, Centre for Mathematical Science, Technical University of Munich, Garching, Germany.
Institute of Computational Biology, Helmholtz Zentrum München, Ingolstädter Landstr. 1, 85764, Neuherberg, Germany.
Methods Mol Biol. 2018;1673:253-271. doi: 10.1007/978-1-4939-7309-5_20.
Mathematical models to study quorum sensing (QS) have become an important tool to explore all aspects of this type of bacterial communication. A wide spectrum of mathematical tools and methods such as dynamical systems, stochastics, and spatial models can be employed. In this chapter, we focus on giving an overview of models consisting of differential equations (DE), which can be used to describe changing quantities, for example, the dynamics of one or more signaling molecule in time and space, often in conjunction with bacterial growth dynamics. The chapter is divided into two sections: ordinary differential equations (ODE) and partial differential equations (PDE) models of QS. Rates of change are represented mathematically by derivatives, i.e., in terms of DE. ODE models allow describing changes in one independent variable, for example, time. PDE models can be used to follow changes in more than one independent variable, for example, time and space. Both types of models often consist of systems (i.e., more than one equation) of equations, such as equations for bacterial growth and autoinducer concentration dynamics. Almost from the onset, mathematical modeling of QS using differential equations has been an interdisciplinary endeavor and many of the works we revised here will be placed into their biological context.
用于研究群体感应(QS)的数学模型已成为探索此类细菌通讯各个方面的重要工具。可以采用多种数学工具和方法,如动态系统、随机方法和空间模型。在本章中,我们重点概述由微分方程(DE)组成的模型,这些模型可用于描述变化的量,例如,一种或多种信号分子在时间和空间上的动态变化,通常还结合细菌生长动态。本章分为两个部分:群体感应的常微分方程(ODE)模型和偏微分方程(PDE)模型。变化率在数学上由导数表示,即根据微分方程。ODE模型允许描述一个自变量的变化,例如时间。PDE模型可用于跟踪多个自变量的变化,例如时间和空间。这两种类型的模型通常都由方程组(即不止一个方程)组成,例如细菌生长方程和自诱导物浓度动态方程。几乎从一开始,使用微分方程对群体感应进行数学建模就是一项跨学科的工作,我们在此修订的许多作品都将置于其生物学背景中。