Ruiz-García Manuel, Pinedo-Castro Myreya, Shostell Joseph Mark
a Departamento de Biología, Facultad de Ciencias , Laboratorio de Genética de Poblaciones-Biología Evolutiva, Unidad de Genética, Pontificia Universidad Javeriana , Bogotá , Colombia.
b Math, Science and Technology Department , University of Minnesota Crookston , Crookston , MN , USA.
Mitochondrial DNA A DNA Mapp Seq Anal. 2018 Oct;29(7):993-1014. doi: 10.1080/24701394.2017.1404041. Epub 2017 Nov 20.
We analysed two sets of mitochondrial (mt) DNA data from tigrinas (traditionally, Leopardus tigrinus) we sampled in Costa Rica, Venezuela, Colombia, Ecuador, Peru, Bolivia, northwestern and northeastern Argentina and southern Brazil. Additionally, the analysis included some GenBank sequences from southern, central and northeastern Brazil. The first mt set (mt ATP8+mt 16S rRNA with 41 tigrina) revealed the existence of seven different tigrina-like haplogroups. They could represent, at least, 4-6 different tigrina species following the Phylogenetic Species Concept (PSC). In the second mt set (mitogenomics with 18 tigrinas), we detected six different tigrina-like haplogroups. They could represent 4-5 different tigrina species - including a possible full new species, which has gone previously unnoticed to the world of science both morphologic and molecularly. Coat patterns of several of these different tigrinas support the molecular differences. We also detected intense hybridization in many Andean tigrina with margays (Leopardus wiedii) and ocelots (Leopardus pardalis) as well as hybridization of one Bolivian tigrina with Leopardus geoffroyi. Similar hybridization was found for many of the southern Brazilian tigrina (Leopardus guttulus). All of the temporal split estimates for these tigrina haplogroups, together with those of the Leopardus species recognized to date, began in the late Pliocene but mostly occurred during the Pleistocene. In agreement with the existence of multiple species within the traditional L. tigrinus species, we detected strong and significant spatial structure in the two mt data sets. There were clear circular clines. A major part of the analyses detected more genetic resemblance between the Central American + trans Andean Colombian and Ecuadorian tigrina (L. oncilla) with the most geographically distant tigrina from central and southern Brazil (L. guttulus; pure individuals not hybridized with L. geoffroyi). In comparison, the Andean tigrina taxa had intermediate geographical origins but were highly genetically differentiated both from the Central American + trans Andean Colombian-Ecuadorian tigrina and from the central and southern Brazilian tigrina.
我们分析了两组线粒体(mt)DNA数据,这些数据来自我们在哥斯达黎加、委内瑞拉、哥伦比亚、厄瓜多尔、秘鲁、玻利维亚、阿根廷西北部和东北部以及巴西南部采集的虎猫(传统上称为Leopardus tigrinus)样本。此外,分析还包括一些来自巴西南部、中部和东北部的GenBank序列。第一组mt数据(mt ATP8 + mt 16S rRNA,共41个虎猫样本)显示存在七个不同的类虎猫单倍群。按照系统发育物种概念(PSC),它们至少可以代表4 - 6个不同的虎猫物种。在第二组mt数据(线粒体基因组学,共18个虎猫样本)中,我们检测到六个不同的类虎猫单倍群。它们可以代表4 - 5个不同的虎猫物种——包括一个可能全新的物种,在形态学和分子层面上,此前科学界都未曾注意到它。这些不同虎猫中的几种的毛色图案支持了分子差异。我们还检测到许多安第斯虎猫与虎猫(Leopardus wiedii)和豹猫(Leopardus pardalis)之间存在强烈的杂交现象,以及一只玻利维亚虎猫与 Geoffroy's猫(Leopardus geoffroyi)杂交。在巴西南部的许多虎猫(Leopardus guttulus)中也发现了类似的杂交现象。所有这些虎猫单倍群的时间分歧估计,以及迄今已确认的豹猫属物种的时间分歧估计,都始于上新世晚期,但大多发生在更新世。与传统的L. tigrinus物种中存在多个物种的情况一致,我们在两组mt数据集中检测到了强烈且显著的空间结构。存在明显的环形渐变群。大部分分析检测到中美洲 + 跨安第斯的哥伦比亚和厄瓜多尔虎猫(L. oncilla)与来自巴西中部和南部地理距离最远的虎猫(L. guttulus;未与L. geoffroyi杂交的纯种个体)之间的遗传相似性更高。相比之下,安第斯虎猫分类群具有中间的地理起源,但在遗传上与中美洲 + 跨安第斯的哥伦比亚 - 厄瓜多尔虎猫以及巴西中部和南部的虎猫都高度分化。