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定量构效关系和分子建模研究:寻找新的先导化合物——分枝杆菌的多药物作用方法。

A QSAR and molecular modelling study towards new lead finding: polypharmacological approach to Mycobacterium tuberculosis.

机构信息

a Centre for Molecular Modelling , CSIR-Indian Institute of Chemical Technology , Hyderabad - 500007 , India.

b Institute of Biomedical Chemistry , Moscow , 119121 , Russia.

出版信息

SAR QSAR Environ Res. 2017 Oct;28(10):815-832. doi: 10.1080/1062936X.2017.1398782.

Abstract

Developing effective inhibitors against Mycobacterium tuberculosis (Mtb) is a challenging task, primarily due to the emergence of resistant strains. In this study, we have proposed and implemented an in silico guided polypharmacological approach, which is expected to be effective against resistant strains by simultaneously inhibiting several potential Mtb drug targets. A combination of pharmacophore and QSAR based virtual screening strategy taking three key targets such as InhA (enoyl-acyl-carrier-protein reductase), GlmU (N-acetyl-glucosamine-1-phosphate uridyltransferase) and DapB (dihydrodipicolinate reductase) have resulted in initial 784 hits from Asinex database of 435,000 compounds. These hits were further subjected to docking with 33 Mtb druggable targets. About 110 potential polypharmacological hits were taken by integrating the aforementioned screening protocols. Further screening was conducted by taking various parameters and properties such as cell permeability, drug-likeness, drug-induced phospholipidosisand structural alerts. A consensus analysis has yielded 59 potential hits that pass through all the filters and can be prioritized for effective drug-resistant tuberculosis. This study proposes about nine potential hits which are expected to be promising molecules, having not only drug-like properties, but also being effective against multiple Mtb targets.

摘要

开发针对结核分枝杆菌(Mtb)的有效抑制剂是一项具有挑战性的任务,主要是由于耐药菌株的出现。在这项研究中,我们提出并实施了一种基于计算指导的多药理学方法,该方法有望通过同时抑制几种潜在的 Mtb 药物靶点来对抗耐药菌株。采用基于药效团和 QSAR 的虚拟筛选策略,结合三个关键靶点,如 InhA(烯酰基辅酶 A 还原酶)、GlmU(N-乙酰葡萄糖胺-1-磷酸尿苷转移酶)和 DapB(二氢二吡啶羧酸还原酶),从 435000 种化合物的 Asinex 数据库中筛选出最初的 784 个命中物。这些命中物进一步与 33 个 Mtb 可成药靶点进行对接。通过整合上述筛选方案,获得了约 110 个潜在的多药理学命中物。进一步的筛选是通过考虑各种参数和特性,如细胞通透性、类药性、药物诱导的磷脂病和结构警示来进行的。共识分析产生了 59 个潜在的命中物,这些命中物通过了所有的筛选,并可优先考虑用于治疗耐药性结核病。这项研究提出了大约 9 个潜在的命中物,这些命中物有望成为有前途的分子,不仅具有类药性,而且对多种 Mtb 靶点有效。

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