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一种基于环介导等温扩增的新型检测方法,用于检测刚地弓形虫 DNA。

A novel loop-mediated isothermal amplification-based test for detecting Neospora caninum DNA.

机构信息

Molecular Biology and Immunology Department, Fundación Instituto de Inmunología de Colombia, Bogotá, Colombia.

Veterinary Medicine and Zootech Faculty, Universidad Nacional de Colombia, Bogotá, Colombia.

出版信息

Parasit Vectors. 2017 Nov 29;10(1):590. doi: 10.1186/s13071-017-2549-y.

Abstract

BACKGROUND

Neospora caninum is a cyst-forming, coccidian parasite which is known to cause neurological disorders in dogs and abortion and neonatal mortality in cows and other livestock. This study reports the development of a loop-mediated isothermal amplification (LAMP) assay based on the Neospora caninum Nc-5 gene and compares its efficacy for detecting DNA to that of a semi-nested PCR test.

RESULTS

Six primers were designed based on the Nc-5 repeat region of N. caninum. Specific LAMP primers led to successful amplification of N. caninum DNA at 63 °C in 30 min. The LAMP assay was highly specific (i.e. it did not reveal cross-reactivity with other parasite species) and had a low N. caninum plasmid DNA limit of detection (1 fg), which is ten times higher than that for the semi-nested PCR. LAMP applicability was evaluated using a set of naturally-infected samples (59 from canine faeces and five from bovine abortions). Thirty-nine percent (25/64) of the naturally-infected samples were positive for N. caninum DNA by LAMP and 36% (23/64) by semi-nested PCR. However, the LAMP assay is much faster to perform than semi-nested PCR and provides results in 30 min.

CONCLUSION

The optimized reaction conditions described in this study resulted in a sensitive, specific and rapid technique for detecting N. caninum DNA. Considering the advantages of LAMP for detecting N. caninum DNA, further assays aimed at testing its usefulness on a wider range of field samples are recommended.

摘要

背景

刚地弓形虫是一种形成囊肿的、球虫类寄生虫,已知其会导致犬类神经紊乱,并会导致牛和其他牲畜流产和新生儿死亡。本研究报告了一种基于刚地弓形虫 Nc-5 基因的环介导等温扩增(LAMP)检测方法的开发,并比较了其检测 DNA 的效果与半巢式 PCR 检测的效果。

结果

根据刚地弓形虫 Nc-5 重复区设计了 6 条引物。特异性 LAMP 引物在 63°C 下 30 分钟内成功扩增了刚地弓形虫 DNA。该 LAMP 检测法具有高度特异性(即与其他寄生虫种无交叉反应),且对刚地弓形虫质粒 DNA 的检出限较低(1fg),比半巢式 PCR 低十倍。使用一组自然感染的样本(犬粪便 59 份,牛流产物 5 份)评估了 LAMP 的适用性。39%(25/64)的自然感染样本用 LAMP 检测到刚地弓形虫 DNA 呈阳性,36%(23/64)用半巢式 PCR 检测到阳性。然而,与半巢式 PCR 相比,LAMP 检测法更快,且在 30 分钟内即可提供结果。

结论

本研究中优化的反应条件产生了一种灵敏、特异和快速的检测刚地弓形虫 DNA 的技术。考虑到 LAMP 检测刚地弓形虫 DNA 的优势,建议进一步检测该方法在更广泛的现场样本中的实用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f759/5707868/3926cb1a7f3d/13071_2017_2549_Fig1_HTML.jpg

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