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环介导等温扩增技术的开发及其与定量实时PCR用于犬新孢子虫病快速可视化检测的比较

Development of a loop-mediated isothermal amplification technique and comparison with quantitative real-time PCR for the rapid visual detection of canine neosporosis.

作者信息

Mahittikorn Aongart, Thammasonthijarern Nipa, Roobthaisong Amonrattana, Udonsom Ruenruetai, Popruk Supaluk, Siri Sukhontha, Mori Hirotake, Sukthana Yaowalark

机构信息

Department of Protozoology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.

Department of Tropical Pediatrics, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.

出版信息

Parasit Vectors. 2017 Aug 23;10(1):394. doi: 10.1186/s13071-017-2330-2.

Abstract

BACKGROUND

Dogs are the definitive hosts of Neospora caninum and play an important role in the transmission of the parasite. Despite the high sensitivity of existing molecular tools such as quantitative real-time PCR (qPCR), these techniques are not suitable for use in many countries because of equipment costs and difficulties in implementing them for field diagnostics. Therefore, we developed a simplified technique, loop-mediated isothermal amplification (LAMP), for the rapid visual detection of N. caninum.

METHODS

LAMP specificity was evaluated using a panel containing DNA from a range of different organisms. Sensitivity was evaluated by preparing 10-fold serial dilutions of N. caninum tachyzoites and comparing the results with those obtained using qPCR. Assessment of the LAMP results was determined by recognition of a colour change after amplification. The usefulness of the LAMP assay in the field was tested on 396 blood and 115 faecal samples from dogs, and one placenta from a heifer collected in Lopburi, Nakhon Pathom, Sa Kaeo, and Ratchaburi provinces, Thailand.

RESULTS

Specificity of the LAMP technique was shown by its inability to amplify DNA from non-target pathogens or healthy dogs. The detection limit was the equivalent of one genome for both LAMP and qPCR. LAMP and qPCR detected positive N. caninum infection in 15 of 396 (3.8%) blood samples; LAMP detected 9/115 (7.8%) positive faecal samples, while qPCR detected 5/115 (4.3%) positive faecal samples. The placental tissue was shown to be positive by both techniques. Agreement between LAMP and qPCR was perfect in blood samples (kappa value, 1.00) and substantial in faecal samples (kappa value, 0.697).

CONCLUSIONS

This is the first known LAMP assay developed for the amplification of N. caninum. The technique effectively and rapidly detected the parasite with high sensitivity and specificity and was cost-effective. This assay could be used in the field to confirm the diagnosis of canine or bovine neosporosis.

摘要

背景

犬是犬新孢子虫的终末宿主,在该寄生虫的传播中起重要作用。尽管现有分子工具如定量实时聚合酶链反应(qPCR)具有高灵敏度,但由于设备成本以及在现场诊断中实施的困难,这些技术在许多国家并不适用。因此,我们开发了一种简化技术,即环介导等温扩增技术(LAMP),用于快速可视化检测犬新孢子虫。

方法

使用包含来自一系列不同生物体的DNA的样本评估LAMP的特异性。通过制备犬新孢子虫速殖子的10倍系列稀释液并将结果与使用qPCR获得的结果进行比较来评估灵敏度。通过识别扩增后的颜色变化来确定LAMP结果的评估。在泰国华富里、佛统、沙缴和叻丕府收集的396份犬血样、115份犬粪便样本以及1份小母牛胎盘样本上测试了LAMP检测法在现场的实用性。

结果

LAMP技术的特异性表现为它无法扩增非目标病原体或健康犬的DNA。LAMP和qPCR的检测限均相当于一个基因组。LAMP和qPCR在396份血样中的15份(3.8%)检测到犬新孢子虫阳性感染;LAMP在115份粪便样本中检测到9份(7.8%)阳性样本,而qPCR检测到5份(4.3%)阳性粪便样本。两种技术均显示胎盘组织为阳性。LAMP和qPCR在血样中的一致性极佳(kappa值为1.00),在粪便样本中的一致性较高(kappa值为0.697)。

结论

这是首次报道的用于扩增犬新孢子虫的LAMP检测法。该技术以高灵敏度和特异性有效且快速地检测到了该寄生虫,并且具有成本效益。该检测法可用于现场确认犬或牛新孢子虫病的诊断。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1975/5569544/6943895d0280/13071_2017_2330_Fig1_HTML.jpg

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