俄勒冈-R-modENCODE菌株BDGP5的全基因组序列，一种在肠道中发现的醋酸菌。
Complete Genome Sequence of Oregon-R-modENCODE Strain BDGP5, an Acetic Acid Bacterium Found in the Gut.
作者信息
Wan Kenneth H, Yu Charles, Park Soo, Hammonds Ann S, Booth Benjamin W, Celniker Susan E
机构信息
Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
出版信息
Genome Announc. 2017 Nov 30;5(48):e01333-17. doi: 10.1128/genomeA.01333-17.
Abstract
Oregon-R-modENCODE strain BDGP5 was isolated from for functional host-microbe interaction studies. The complete genome is composed of a single chromosomal circle of 2,848,089 bp, with a G+C content of 53% and three plasmids of 131,455 bp, 19,216 bp, and 9,160 bp.
摘要
俄勒冈-R-modENCODE菌株BDGP5是从[具体来源未提及]分离出来用于宿主-微生物相互作用功能研究的。其完整基因组由一个2,848,089 bp的单一染色体环状物组成，G+C含量为53%，还有三个分别为131,455 bp、19,216 bp和9,160 bp的质粒。
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本文引用的文献
1
Wake me when it's over - Bacterial toxin-antitoxin proteins and induced dormancy.结束时叫醒我——细菌毒素-抗毒素蛋白与诱导休眠
Exp Biol Med (Maywood). 2016 Jun;241(12):1332-42. doi: 10.1177/1535370216651938. Epub 2016 May 22.
2
In vivo function and comparative genomic analyses of the Drosophila gut microbiota identify candidate symbiosis factors.果蝇肠道微生物群的体内功能及比较基因组分析确定了候选共生因子。
Front Microbiol. 2014 Nov 4;5:576. doi: 10.3389/fmicb.2014.00576. eCollection 2014.
3
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
4
Interspecies interactions determine the impact of the gut microbiota on nutrient allocation in Drosophila melanogaster.种间相互作用决定了肠道微生物群对黑腹果蝇营养分配的影响。
Appl Environ Microbiol. 2014 Jan;80(2):788-96. doi: 10.1128/AEM.02742-13. Epub 2013 Nov 15.
5
A user's guide to quantitative and comparative analysis of metagenomic datasets.宏基因组数据集定量与比较分析用户指南
Methods Enzymol. 2013;531:525-47. doi: 10.1016/B978-0-12-407863-5.00023-X.
6
Reducing assembly complexity of microbial genomes with single-molecule sequencing.利用单分子测序降低微生物基因组的组装复杂性
Genome Biol. 2013;14(9):R101. doi: 10.1186/gb-2013-14-9-r101.
7
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
8
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory.使用带有连续精炼的基本局部比对（BLASR）对单分子测序reads 进行映射：应用与理论。
BMC Bioinformatics. 2012 Sep 19;13:238. doi: 10.1186/1471-2105-13-238.
9
Gut-associated microbes of Drosophila melanogaster.果蝇的肠道相关微生物。
Gut Microbes. 2012 Jul-Aug;3(4):307-21. doi: 10.4161/gmic.19896. Epub 2012 May 10.
10
"First generation" automated DNA sequencing technology.“第一代”自动化DNA测序技术。
Curr Protoc Mol Biol. 2011 Oct;Chapter 7:Unit7.2. doi: 10.1002/0471142727.mb0702s96.
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