Maiti Smarajit, Samanta Tanmoy, Sahoo Sumit, Roy Sudipta
Department of Biochemistry and Biotechnology, Cell and Molecular Therapeutics Laboratory, Oriental Institute of Science and Technology, Vidyasagar University, Midnapore, India.
J Mol Microbiol Biotechnol. 2017;27(6):319-331. doi: 10.1159/000479109. Epub 2017 Dec 2.
A protein showing endoglucanase-peptidase activity was prepared from a newly isolated bacterium (ST15c10). We identified ST15c10 as Brevibacillus agri based on electron-microscopic images and its 16S-rDNA sequence (GenBank accession No. HM446043), which exhibits 98.9% sequence identity to B. agri (KZ17)/B. formosus (DSM-9885T)/B. brevis. The enzyme was purified to homogeneity and gave a single peak during high-performance liquid chromatography on a Seralose 6B-150 gel-matrix/C-18 column. MALDI-TOF mass-spectrometry and bioinformatics studies revealed significant similarity to M42-aminopeptidases/endoglucanases of the CelM family. These enzymes are found in all Brevibacillus strains for which the genome sequence is known. ST15c10 grows optimally on carboxymethyl cellulose (CMC)-gelatin (40°C/pH 8-9), and also shows strong growth/carboxymethyl cellulase (CMCase) activity in submerged bagasse fermentation. The purified enzyme also functions as endoglucanase with solid bagasse/rice straw. Its CMCase activity (optimal at pH 5.6 and 60°C/Km = 35.5 µM/Vmax = 1,024U) was visualized by zymography on a CMC-polyacrylamide gel, which provided a strong band of approximately 70 kDa. The purified enzyme also showed strong peptidase (gelatinase) activity (pH 7.2/40°C during zymography on 6-12% gelatin/1% gelatin-PAGE (at approx. 70 kDa). The CMCase activity is inhibited by the metal ions Mn/Cu/Fe/Co (50%), Hg/KMnO4 (100%), and by glucose or lactose (50-75%; all at 1 mM). The observed dose/time-dependent inhibition by Hg ions could be prevented with 2-mercaptoethanol. A comparison of the B. agri endoglucanase-aminopeptidase (ELK43520; 350 aa) with other members of the M42-family revealed the conservation of active-site residues Cys256/Cys260, which were previously identified as metal-binding sites. Regulation of the endoglucanase activity probably occurs via metal binding-triggered changes in the redox state of the enzyme. Studies on this type of enzyme are of high importance for basic scientific and industrial research.
从新分离出的细菌(ST15c10)中制备了一种具有内切葡聚糖酶 - 肽酶活性的蛋白质。基于电子显微镜图像及其16S - rDNA序列(GenBank登录号HM446043),我们将ST15c10鉴定为农业短芽孢杆菌,它与农业短芽孢杆菌(KZ17)/ 福氏短芽孢杆菌(DSM - 9885T)/ 短短芽孢杆菌的序列同一性为98.9%。该酶被纯化至同质,在Seralose 6B - 150凝胶基质/C - 18柱上进行高效液相色谱时出现单一峰。基质辅助激光解吸电离飞行时间质谱(MALDI - TOF)和生物信息学研究表明,它与CelM家族的M42 - 氨肽酶/内切葡聚糖酶具有显著相似性。在所有已知基因组序列的短芽孢杆菌菌株中都发现了这些酶。ST15c10在羧甲基纤维素(CMC) - 明胶(40°C/pH 8 - 9)上生长最佳,并且在蔗渣深层发酵中也表现出强烈的生长/羧甲基纤维素酶(CMCase)活性。纯化后的酶对固体蔗渣/稻草也具有内切葡聚糖酶的功能。其CMCase活性(在pH 5.6和60°C时最佳/Km = 35.5 µM/Vmax = 1,024U)通过在CMC - 聚丙烯酰胺凝胶上的酶谱法可视化,呈现出一条约70 kDa的强条带。纯化后的酶还表现出强烈的肽酶(明胶酶)活性(在6 - 12%明胶/1%明胶 - PAGE上进行酶谱分析时,pH 7.2/40°C,约70 kDa)。CMCase活性受到金属离子Mn/Cu/Fe/Co(50%)、Hg/KMnO4(100%)以及葡萄糖或乳糖(50 - 75%;均为1 mM)的抑制。Hg离子观察到的剂量/时间依赖性抑制作用可被2 - 巯基乙醇阻止。将农业短芽孢杆菌的内切葡聚糖酶 - 氨肽酶(ELK43520;350个氨基酸)与M42家族的其他成员进行比较,发现活性位点残基Cys256/Cys260具有保守性,这些残基先前被确定为金属结合位点。内切葡聚糖酶活性的调节可能通过金属结合引发的酶氧化还原状态变化来实现。对这类酶的研究对基础科学和工业研究具有高度重要性。