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富含硫化氢温泉中的产仔鱼类(胎生鱂科)氧气运输基因的分子进化和表达。

Molecular evolution and expression of oxygen transport genes in livebearing fishes (Poeciliidae) from hydrogen sulfide rich springs.

机构信息

a Division of Biology, Kansas State University, 116 Ackert Hall, Manhattan, KS 66506, USA.

b Ecology, Evolution and Behavior, University of Minnesota St. Paul, 205 Cargill Building, St. Paul, MN 55108, USA.

出版信息

Genome. 2018 Apr;61(4):273-286. doi: 10.1139/gen-2017-0051. Epub 2017 Dec 11.

Abstract

Hydrogen sulfide (HS) is a natural toxicant in some aquatic environments that has diverse molecular targets. It binds to oxygen transport proteins, rendering them non-functional by reducing oxygen-binding affinity. Hence, organisms permanently inhabiting HS-rich environments are predicted to exhibit adaptive modifications to compensate for the reduced capacity to transport oxygen. We investigated 10 lineages of fish of the family Poeciliidae that have colonized freshwater springs rich in HS-along with related lineages from non-sulfidic environments-to test hypotheses about the expression and evolution of oxygen transport genes in a phylogenetic context. We predicted shifts in the expression of and signatures of positive selection on oxygen transport genes upon colonization of HS-rich habitats. Our analyses indicated significant shifts in gene expression for multiple hemoglobin genes in lineages that have colonized HS-rich environments, and three hemoglobin genes exhibited relaxed selection in sulfidic compared to non-sulfidic lineages. However, neither changes in gene expression nor signatures of selection were consistent among all lineages in HS-rich environments. Oxygen transport genes may consequently be predictable targets of selection during adaptation to sulfidic environments, but changes in gene expression and molecular evolution of oxygen transport genes in HS-rich environments are not necessarily repeatable across replicated lineages.

摘要

硫化氢(HS)是一些水生环境中的天然毒物,具有多种分子靶标。它与氧气运输蛋白结合,通过降低氧结合亲和力使它们失去功能。因此,预测永久栖息在 HS 丰富环境中的生物会表现出适应性的改变,以补偿氧气运输能力的降低。我们研究了 10 个丽鱼科鱼类的谱系,这些鱼类已经在富含 HS 的淡水泉中定居,以及来自非硫化环境的相关谱系,以在系统发育背景下检验关于氧气运输基因表达和进化的假说。我们预测,在 HS 丰富的栖息地中殖民化后,氧气运输基因的表达和正选择的特征会发生变化。我们的分析表明,在已经殖民化 HS 丰富环境的谱系中,多个血红蛋白基因的表达发生了显著变化,与非硫化谱系相比,有 3 个血红蛋白基因在硫化谱系中表现出松弛选择。然而,HS 丰富环境中的所有谱系都没有出现一致的基因表达变化或选择特征。因此,氧气运输基因可能是适应硫化环境选择的可预测靶点,但 HS 丰富环境中氧气运输基因的表达变化和分子进化不一定在重复的谱系中重复出现。

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