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1994 年至 2017 年间发布的 3649 项基于 Web 的服务中,有快照显示,这些服务的可用性在 2 年后会下降。

A snapshot of 3649 Web-based services published between 1994 and 2017 shows a decrease in availability after 2 years.

机构信息

MTA TTK Lendület Cancer Biomarker Research Group, Hungarian Academy of Sciences, Institute of Enzymology, Magyar tudósok körútja 2, H-1117, Budapest, Hungary.

出版信息

Brief Bioinform. 2019 May 21;20(3):1004-1010. doi: 10.1093/bib/bbx159.

Abstract

BACKGROUND

The long-term availability of online Web services is of utmost importance to ensure reproducibility of analytical results. However, because of lack of maintenance following acceptance, many servers become unavailable after a short period of time. Our aim was to monitor the accessibility and the decay rate of published Web services as well as to determine the factors underlying trends changes.

METHODS

We searched PubMed to identify publications containing Web server-related terms published between 1994 and 2017. Automatic and manual screening was used to check the status of each Web service. Kruskall-Wallis, Mann-Whitney and Chi-square tests were used to evaluate various parameters, including availability, accessibility, platform, origin of authors, citation, journal impact factor and publication year.

RESULTS

We identified 3649 publications in 375 journals of which 2522 (69%) were currently active. Over 95% of sites were running in the first 2 years, but this rate dropped to 84% in the third year and gradually sank afterwards (P < 1e-16). The mean half-life of Web services is 10.39 years. Working Web services were published in journals with higher impact factors (P = 4.8e-04). Services published before the year 2000 received minimal attention. The citation of offline services was less than for those online (P = 0.022). The majority of Web services provide analytical tools, and the proportion of databases is slowly decreasing. Conclusions. Almost one-third of Web services published to date went out of service. We recommend continued support of Web-based services to increase the reproducibility of published results.

摘要

背景

确保分析结果的可重复性,长期提供在线 Web 服务至关重要。但是,由于缺乏维护,许多服务器在短时间内就无法使用。我们的目的是监测已发布 Web 服务的可访问性和衰减率,并确定导致趋势变化的因素。

方法

我们在 PubMed 中搜索了 1994 年至 2017 年发表的包含 Web 服务器相关术语的文章。使用自动和手动筛选来检查每个 Web 服务的状态。使用 Kruskal-Wallis、Mann-Whitney 和卡方检验评估各种参数,包括可用性、可访问性、平台、作者来源、引用、期刊影响因子和发表年份。

结果

我们在 375 种期刊中识别出 3649 篇文章,其中 2522 篇(69%)目前处于活跃状态。超过 95%的站点在前两年运行,但这一比例在第三年降至 84%,此后逐渐下降(P < 1e-16)。Web 服务的平均半衰期为 10.39 年。在线服务发表在影响因子较高的期刊中(P = 4.8e-04)。2000 年前发表的服务受到的关注较少。离线服务的引用少于在线服务(P = 0.022)。大多数 Web 服务提供分析工具,数据库的比例正在缓慢减少。结论:迄今为止,已发布的 Web 服务中有近三分之一已停止服务。我们建议继续支持基于 Web 的服务,以提高已发表结果的可重复性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/651f/6585384/22816f857fe3/bbx159f1.jpg

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