Walsh Christopher T, Tang Yi
Chemistry, Engineering, and Medicine for Human Health (ChEM-H) , Stanford University , Stanford , California 94305-4125 , United States.
Department of Chemical and Biomolecular Engineering and Department of Chemistry and Biochemistry , University of California , Los Angeles , California 90095-1592 , United States.
Biochemistry. 2018 Jun 5;57(22):3087-3104. doi: 10.1021/acs.biochem.7b01161. Epub 2017 Dec 20.
Enzymes in biosynthetic pathways, especially in plant and microbial metabolism, generate structural and functional group complexity in small molecules by conversion of acyclic frameworks to cyclic scaffolds via short, efficient routes. The distinct chemical logic used by several distinct classes of cyclases, oxidative and non-oxidative, has recently been elucidated by genome mining, heterologous expression, and genetic and mechanistic analyses. These include enzymes performing pericyclic transformations, pyran synthases, tandem acting epoxygenases, and epoxide "hydrolases", as well as oxygenases and radical S-adenosylmethionine enzymes that involve rearrangements of substrate radicals under aerobic or anaerobic conditions.
生物合成途径中的酶,尤其是植物和微生物代谢中的酶,通过短而高效的途径将无环骨架转化为环状支架,从而在小分子中产生结构和官能团的复杂性。最近,通过基因组挖掘、异源表达以及遗传和机理分析,阐明了几种不同类型的环化酶(氧化型和非氧化型)所使用的独特化学逻辑。这些酶包括进行周环转化的酶、吡喃合酶、串联作用的环氧化酶和环氧化物“水解酶”,以及在有氧或无氧条件下涉及底物自由基重排的加氧酶和自由基S-腺苷甲硫氨酸酶。