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酶促复杂性生成的最新进展:环化反应

Recent Advances in Enzymatic Complexity Generation: Cyclization Reactions.

作者信息

Walsh Christopher T, Tang Yi

机构信息

Chemistry, Engineering, and Medicine for Human Health (ChEM-H) , Stanford University , Stanford , California 94305-4125 , United States.

Department of Chemical and Biomolecular Engineering and Department of Chemistry and Biochemistry , University of California , Los Angeles , California 90095-1592 , United States.

出版信息

Biochemistry. 2018 Jun 5;57(22):3087-3104. doi: 10.1021/acs.biochem.7b01161. Epub 2017 Dec 20.

Abstract

Enzymes in biosynthetic pathways, especially in plant and microbial metabolism, generate structural and functional group complexity in small molecules by conversion of acyclic frameworks to cyclic scaffolds via short, efficient routes. The distinct chemical logic used by several distinct classes of cyclases, oxidative and non-oxidative, has recently been elucidated by genome mining, heterologous expression, and genetic and mechanistic analyses. These include enzymes performing pericyclic transformations, pyran synthases, tandem acting epoxygenases, and epoxide "hydrolases", as well as oxygenases and radical S-adenosylmethionine enzymes that involve rearrangements of substrate radicals under aerobic or anaerobic conditions.

摘要

生物合成途径中的酶,尤其是植物和微生物代谢中的酶,通过短而高效的途径将无环骨架转化为环状支架,从而在小分子中产生结构和官能团的复杂性。最近,通过基因组挖掘、异源表达以及遗传和机理分析,阐明了几种不同类型的环化酶(氧化型和非氧化型)所使用的独特化学逻辑。这些酶包括进行周环转化的酶、吡喃合酶、串联作用的环氧化酶和环氧化物“水解酶”,以及在有氧或无氧条件下涉及底物自由基重排的加氧酶和自由基S-腺苷甲硫氨酸酶。

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本文引用的文献

1
Insights into the Dual Activity of a Bifunctional Dehydratase-Cyclase Domain.
Angew Chem Int Ed Engl. 2018 Jan 2;57(1):343-347. doi: 10.1002/anie.201707774. Epub 2017 Dec 6.
2
SAM-dependent enzyme-catalysed pericyclic reactions in natural product biosynthesis.
Nature. 2017 Sep 28;549(7673):502-506. doi: 10.1038/nature23882. Epub 2017 Sep 13.
3
Radical S-Adenosylmethionine Enzymes Involved in RiPP Biosynthesis.
Biochemistry. 2017 Oct 10;56(40):5229-5244. doi: 10.1021/acs.biochem.7b00771. Epub 2017 Sep 22.
4
Investigation of the mechanism of the SpnF-catalyzed [4+2]-cycloaddition reaction in the biosynthesis of spinosyn A.
Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):10408-10413. doi: 10.1073/pnas.1710496114. Epub 2017 Sep 5.
5
OleB from Bacterial Hydrocarbon Biosynthesis Is a β-Lactone Decarboxylase That Shares Key Features with Haloalkane Dehalogenases.
Biochemistry. 2017 Oct 10;56(40):5278-5287. doi: 10.1021/acs.biochem.7b00667. Epub 2017 Sep 19.
6
At the confluence of ribosomally synthesized peptide modification and radical -adenosylmethionine (SAM) enzymology.
J Biol Chem. 2017 Oct 6;292(40):16397-16405. doi: 10.1074/jbc.R117.797399. Epub 2017 Aug 22.
7
Colibactin assembly line enzymes use S-adenosylmethionine to build a cyclopropane ring.
Nat Chem Biol. 2017 Oct;13(10):1063-1065. doi: 10.1038/nchembio.2448. Epub 2017 Aug 7.
8
Biosynthesis of Complex Indole Alkaloids: Elucidation of the Concise Pathway of Okaramines.
Angew Chem Int Ed Engl. 2017 Aug 1;56(32):9478-9482. doi: 10.1002/anie.201705501. Epub 2017 Jul 6.
10
β-Lactone formation during product release from a nonribosomal peptide synthetase.
Nat Chem Biol. 2017 Jul;13(7):737-744. doi: 10.1038/nchembio.2374. Epub 2017 May 15.

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