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野生型人丝氨酸消旋酶新型抑制剂的设计、合成与评估

Design, synthesis, and evaluation of novel inhibitors for wild-type human serine racemase.

作者信息

Takahara Satoyuki, Nakagawa Kiyomi, Uchiyama Tsugumi, Yoshida Tomoyuki, Matsumoto Kazunori, Kawasumi Yasuo, Mizuguchi Mineyuki, Obita Takayuki, Watanabe Yurie, Hayakawa Daichi, Gouda Hiroaki, Mori Hisashi, Toyooka Naoki

机构信息

Graduate School of Innovative Life Science, University of Toyama, Japan.

Graduate School of Science and Engineering, University of Toyama, Japan.

出版信息

Bioorg Med Chem Lett. 2018 Feb 1;28(3):441-445. doi: 10.1016/j.bmcl.2017.12.021. Epub 2017 Dec 13.

DOI:10.1016/j.bmcl.2017.12.021
PMID:29277459
Abstract

Most of the endogenous free d-serine (about 90%) in the brain is produced by serine racemase (SR). d-Serine in the brain is involved in neurodegenerative disorders and epileptic states as an endogenous co-agonist of the NMDA-type glutamate receptor. Thus, SR inhibitors are expected to be novel therapeutic candidates for the treatment of these disorders. In this study, we solved the crystal structure of wild-type SR, and tried to identify a new inhibitor of SR by in silico screening using the structural information. As a result, we identified two hit compounds by their in vitro evaluations using wild-type SR. Based on the structure of the more potent hit compound 1, we synthesized 15 derivatives and evaluated their inhibitory activities against wild-type SR. Among them, the compound 9C showed relatively high inhibitory potency for wild-type SR. Compound 9C was a more potent inhibitor than compound 24, which was synthesized by our group based upon the structural information of the mutant-type SR.

摘要

大脑中大部分内源性游离 D-丝氨酸(约 90%)由丝氨酸消旋酶(SR)产生。大脑中的 D-丝氨酸作为 N-甲基-D-天冬氨酸(NMDA)型谷氨酸受体的内源性共激动剂,参与神经退行性疾病和癫痫状态。因此,SR 抑制剂有望成为治疗这些疾病的新型候选药物。在本研究中,我们解析了野生型 SR 的晶体结构,并尝试利用该结构信息通过计算机筛选来鉴定一种新的 SR 抑制剂。结果,通过使用野生型 SR 的体外评估,我们鉴定出了两种有活性的化合物。基于活性更强的命中化合物 1 的结构,我们合成了 15 种衍生物,并评估了它们对野生型 SR 的抑制活性。其中,化合物 9C 对野生型 SR 表现出相对较高的抑制效力。化合物 9C 是一种比化合物 24 更有效的抑制剂,化合物 24 是我们小组根据突变型 SR 的结构信息合成的。

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Design, synthesis, and evaluation of novel inhibitors for wild-type human serine racemase.野生型人丝氨酸消旋酶新型抑制剂的设计、合成与评估
Bioorg Med Chem Lett. 2018 Feb 1;28(3):441-445. doi: 10.1016/j.bmcl.2017.12.021. Epub 2017 Dec 13.
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引用本文的文献

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Human Serine Racemase Weakly Binds the Third PDZ Domain of PSD-95.人丝氨酸消旋酶与 PSD-95 的第三个 PDZ 结构域弱结合。
Int J Mol Sci. 2022 Apr 29;23(9):4959. doi: 10.3390/ijms23094959.
2
Tyrosine 121 moves revealing a ligandable pocket that couples catalysis to ATP-binding in serine racemase.酪氨酸 121 移动揭示了一个可配体的口袋,它将催化与丝氨酸消旋酶的 ATP 结合偶联起来。
Commun Biol. 2022 Apr 11;5(1):346. doi: 10.1038/s42003-022-03264-5.
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d-Serine controls epidermal vesicle release via NMDA receptor, allowing tissue migration during the metamorphosis of the chordate .
d-丝氨酸通过 NMDA 受体控制表皮囊泡释放,从而允许脊索动物变态过程中的组织迁移。
Sci Adv. 2022 Mar 11;8(10):eabn3264. doi: 10.1126/sciadv.abn3264.
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Conformational flexibility within the small domain of human serine racemase.人丝氨酸消旋酶小结构域内的构象灵活性。
Acta Crystallogr F Struct Biol Commun. 2020 Feb 1;76(Pt 2):65-73. doi: 10.1107/S2053230X20001193. Epub 2020 Feb 3.
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The Energy Landscape of Human Serine Racemase.人类丝氨酸消旋酶的能量景观
Front Mol Biosci. 2019 Jan 9;5:112. doi: 10.3389/fmolb.2018.00112. eCollection 2018.