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人类妊娠的蛋白质组钟。

A proteomic clock of human pregnancy.

机构信息

Department of Anesthesiology, Perioperative, and Pain Medicine, Stanford University School of Medicine, Stanford, CA.

Department of Neurology and Neurological Science, Stanford University School of Medicine, Stanford, CA.

出版信息

Am J Obstet Gynecol. 2018 Mar;218(3):347.e1-347.e14. doi: 10.1016/j.ajog.2017.12.208. Epub 2017 Dec 24.

Abstract

BACKGROUND

Early detection of maladaptive processes underlying pregnancy-related pathologies is desirable because it will enable targeted interventions ahead of clinical manifestations. The quantitative analysis of plasma proteins features prominently among molecular approaches used to detect deviations from normal pregnancy. However, derivation of proteomic signatures sufficiently predictive of pregnancy-related outcomes has been challenging. An important obstacle hindering such efforts were limitations in assay technology, which prevented the broad examination of the plasma proteome.

OBJECTIVE

The recent availability of a highly multiplexed platform affording the simultaneous measurement of 1310 plasma proteins opens the door for a more explorative approach. The major aim of this study was to examine whether analysis of plasma collected during gestation of term pregnancy would allow identifying a set of proteins that tightly track gestational age. Establishing precisely timed plasma proteomic changes during term pregnancy is a critical step in identifying deviations from regular patterns caused by fetal and maternal maladaptations. A second aim was to gain insight into functional attributes of identified proteins and link such attributes to relevant immunological changes.

STUDY DESIGN

Pregnant women participated in this longitudinal study. In 2 subsequent sets of 21 (training cohort) and 10 (validation cohort) women, specific blood specimens were collected during the first (7-14 weeks), second (15-20 weeks), and third (24-32 weeks) trimesters and 6 weeks postpartum for analysis with a highly multiplexed aptamer-based platform. An elastic net algorithm was applied to infer a proteomic model predicting gestational age. A bootstrapping procedure and piecewise regression analysis was used to extract the minimum number of proteins required for predicting gestational age without compromising predictive power. Gene ontology analysis was applied to infer enrichment of molecular functions among proteins included in the proteomic model. Changes in abundance of proteins with such functions were linked to immune features predictive of gestational age at the time of sampling in pregnancies delivering at term.

RESULTS

An independently validated model consisting of 74 proteins strongly predicted gestational age (P = 3.8 × 10, R = 0.97). The model could be reduced to 8 proteins without losing its predictive power (P = 1.7 × 10, R = 0.91). The 3 top ranked proteins were glypican 3, chorionic somatomammotropin hormone, and granulins. Proteins activating the Janus kinase and signal transducer and activator of transcription pathway were enriched in the proteomic model, chorionic somatomammotropin hormone being the top-ranked protein. Abundance of chorionic somatomammotropin hormone strongly correlated with signal transducer and activator of transcription-5 signaling activity in CD4 T cells, the endogenous cell-signaling event most predictive of gestational age.

CONCLUSION

Results indicate that precisely timed changes in the plasma proteome during term pregnancy mirror a proteomic clock. Importantly, the combined use of several plasma proteins was required for accurate prediction. The exciting promise of such a clock is that deviations from its regular chronological profile may assist in the early diagnoses of pregnancy-related pathologies, and point to underlying pathophysiology. Functional analysis of the proteomic model generated the novel hypothesis that chrionic somatomammotropin hormone may critically regulate T-cell function during pregnancy.

摘要

背景

早期发现与妊娠相关疾病相关的适应不良过程是可取的,因为这将使我们能够在临床表现出现之前进行有针对性的干预。定量分析血浆蛋白是用于检测正常妊娠偏离的分子方法之一。然而,开发出足够预测妊娠相关结果的蛋白质组学特征一直具有挑战性。阻碍这一努力的一个重要障碍是检测技术的局限性,这阻止了对血浆蛋白质组的广泛检测。

目的

最近一种高通量平台的出现为更具探索性的方法提供了可能。本研究的主要目的是检查在足月妊娠期间采集的血浆是否可以识别一组与妊娠龄紧密相关的蛋白质。确定足月妊娠期间血浆蛋白质组的确切时间变化是识别由胎儿和母体适应不良引起的正常模式偏差的关键步骤。第二个目的是深入了解鉴定出的蛋白质的功能属性,并将这些属性与相关的免疫学变化联系起来。

研究设计

孕妇参与了这项纵向研究。在随后的两组 21 名(训练队列)和 10 名(验证队列)女性中,在妊娠的第一(7-14 周)、第二(15-20 周)和第三(24-32 周) trimester 以及产后 6 周采集特定的血液样本,然后使用高度高通量的适体为基础的平台进行分析。应用弹性网算法推断预测妊娠龄的蛋白质组模型。使用 bootstrap 程序和分段回归分析,提取预测妊娠龄所需的最少蛋白质数量,而不影响预测能力。应用基因本体论分析推断蛋白质组模型中包含的蛋白质的分子功能富集。与在足月分娩时采样时预测妊娠龄相关的免疫特征相关的具有此类功能的蛋白质丰度变化。

结果

一个由 74 种蛋白质组成的独立验证模型强烈预测了妊娠龄(P = 3.8×10,R = 0.97)。该模型可以减少到 8 种蛋白质而不丧失其预测能力(P = 1.7×10,R = 0.91)。排名前 3 的蛋白质是糖蛋白 3、胎盘生长激素和颗粒蛋白。蛋白质组模型中富含激活 Janus 激酶和信号转导及转录激活因子(STAT)通路的蛋白质,胎盘生长激素是排名最高的蛋白质。胎盘生长激素的丰度与 CD4 T 细胞中信号转导及转录激活因子-5 信号活性强烈相关,这是预测妊娠龄的最具预测性的内源性细胞信号事件。

结论

结果表明,足月妊娠期间血浆蛋白质组的精确时间变化反映了蛋白质组时钟。重要的是,准确预测需要结合使用几种血浆蛋白。这种时钟的令人兴奋的前景是,其规律的时间图谱的偏离可能有助于妊娠相关疾病的早期诊断,并指出潜在的病理生理学。蛋白质组模型的功能分析产生了一个新的假设,即胎盘生长激素可能在妊娠期间对 T 细胞功能进行关键调节。

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