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最优性的通用图谱揭示了驱动蛋白的两种化学机械偶联机制:从F-ATP酶和驱动蛋白到肌球蛋白和胞质动力蛋白。

Generic maps of optimality reveal two chemomechanical coupling regimes for motor proteins: from F-ATPase and kinesin to myosin and cytoplasmic dynein.

作者信息

Wang Zhisong

机构信息

Department of Physics, National University of Singapore, Singapore 117542, Singapore.

出版信息

Integr Biol (Camb). 2018 Jan 22;10(1):34-47. doi: 10.1039/c7ib00142h.

Abstract

Many motor proteins achieve high efficiency for chemomechanical conversion, and single-molecule force-resisting experiments are a major tool to detect the chemomechanical coupling of efficient motors. Here, we introduce several quantitative relations that involve only parameters extracted from force-resisting experiments and offer new benchmarks beyond mere efficiency to judge the chemomechanical optimality or deficit of evolutionary remote motors on the same footing. The relations are verified by the experimental data from F-ATPase, kinesin-1, myosin V and cytoplasmic dynein, which are representative members of four motor protein families. A double-fitting procedure yields the chemomechanical parameters that can be cross-checked for consistency. Using the extracted parameters, two generic maps of chemomechanical optimality are constructed on which motors across families can be quantitatively compared. The maps reveal two chemomechanical coupling regimes, one conducive to high efficiency and high directionality, and the other advantageous to force generation. Surprisingly, an F rotor and a kinesin-1 walker belong to the first regime despite their obvious evolutionary gap, while myosin V and cytoplasmic dynein follow the second regime. This analysis also predicts the symmetries of directional biases and heat productions for the motors, which impose constraints on their chemomechanical coupling and are open to future experimental tests. The verified relations, six in total, present a unified fitting framework to analyze force-resisting experiments. The generic maps of optimality, to which many more motors can be added in future, provide a rigorous method for a systematic cross-family comparison of motors to expose their evolutionary connections and mechanistic similarities.

摘要

许多马达蛋白在化学机械转换方面具有很高的效率,单分子抗力实验是检测高效马达化学机械耦合的主要工具。在此,我们介绍了几个仅涉及从抗力实验中提取的参数的定量关系,并提供了超越单纯效率的新基准,以便在相同基础上判断进化上远缘马达的化学机械最优性或缺陷。这些关系通过来自F-ATP酶、驱动蛋白-1、肌球蛋白V和细胞质动力蛋白的实验数据得到验证,它们是四个马达蛋白家族的代表性成员。双重拟合程序产生可进行一致性交叉核对的化学机械参数。利用提取的参数,构建了两个化学机械最优性的通用图谱,可在其上对不同家族的马达进行定量比较。这些图谱揭示了两种化学机械耦合模式,一种有利于高效率和高方向性,另一种有利于力的产生。令人惊讶的是,尽管F转子和驱动蛋白-1行走器存在明显的进化差异,但它们属于第一种模式,而肌球蛋白V和细胞质动力蛋白则遵循第二种模式。该分析还预测了马达方向性偏差和热产生的对称性,这对它们的化学机械耦合施加了限制,并有待未来的实验检验。总共六个经过验证的关系提供了一个统一的拟合框架来分析抗力实验。最优性的通用图谱未来还可添加更多马达,为系统地跨家族比较马达以揭示它们的进化联系和机制相似性提供了一种严谨的方法。

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