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菠萝中SWEET糖转运蛋白的功能与进化特征

Functional and evolution characterization of SWEET sugar transporters in Ananas comosus.

作者信息

Guo Chengying, Li Huayang, Xia Xinyao, Liu Xiuyuan, Yang Long

机构信息

Agricultural Big-Data Research Center, College of Information Science and Engineering, College of Plant Protection, Shandong Agricultural University, Taian 271018, China.

Agricultural Big-Data Research Center, College of Information Science and Engineering, College of Plant Protection, Shandong Agricultural University, Taian 271018, China.

出版信息

Biochem Biophys Res Commun. 2018 Feb 5;496(2):407-414. doi: 10.1016/j.bbrc.2018.01.024. Epub 2018 Jan 4.

Abstract

Sugars will eventually be exported transporters (SWEETs) are a group of recently identified sugar transporters in plants that play important roles in diverse physiological processes. However, currently, limited information about this gene family is available in pineapple (Ananas comosus). The availability of the recently released pineapple genome sequence provides the opportunity to identify SWEET genes in a Bromeliaceae family member at the genome level. In this study, 39 pineapple SWEET genes were identified in two pineapple cultivars (18 AnfSWEET and 21 AnmSWEET) and further phylogenetically classified into five clades. A phylogenetic analysis revealed distinct evolutionary paths for the SWEET genes of the two pineapple cultivars. The MD2 cultivar might have experienced a different expansion than the F153 cultivar because two additional duplications exist, which separately gave rise to clades III and IV. A gene exon/intron structure analysis showed that the pineapple SWEET genes contained highly conserved exon/intron numbers. An analysis of public RNA-seq data and expression profiling showed that SWEET genes may be involved in fruit development and ripening processes. AnmSWEET5 and AnmSWEET11 were highly expressed in the early stages of pineapple fruit development and then decreased. The study increases the understanding of the roles of SWEET genes in pineapple.

摘要

糖最终输出转运蛋白(SWEETs)是植物中一组最近发现的糖转运蛋白,在多种生理过程中发挥重要作用。然而,目前关于菠萝(凤梨)中这个基因家族的信息有限。最近公布的菠萝基因组序列为在凤梨科家族成员中从基因组水平鉴定SWEET基因提供了机会。在本研究中,在两个菠萝品种中鉴定出39个菠萝SWEET基因(18个AnfSWEET和21个AnmSWEET),并进一步系统发育分类为五个进化枝。系统发育分析揭示了两个菠萝品种的SWEET基因不同的进化路径。MD2品种可能经历了与F153品种不同的扩增,因为存在另外两个重复事件,它们分别产生了进化枝III和IV。基因外显子/内含子结构分析表明,菠萝SWEET基因含有高度保守的外显子/内含子数量。对公开的RNA测序数据和表达谱分析表明,SWEET基因可能参与果实发育和成熟过程。AnmSWEET5和AnmSWEET11在菠萝果实发育早期高表达,然后下降。该研究增加了对SWEET基因在菠萝中作用的理解。

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