• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

转座子衍生的小 RNA 被 miR845 触发,在拟南芥中介导基因组剂量反应。

Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis.

机构信息

Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.

出版信息

Nat Genet. 2018 Feb;50(2):186-192. doi: 10.1038/s41588-017-0032-5. Epub 2018 Jan 15.

DOI:10.1038/s41588-017-0032-5
PMID:29335544
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5805582/
Abstract

Chromosome dosage has substantial effects on reproductive isolation and speciation in both plants and animals, but the underlying mechanisms are largely obscure . Transposable elements in animals can regulate hybridity through maternal small RNA , whereas small RNAs in plants have been postulated to regulate dosage response via neighboring imprinted genes. Here we show that a highly conserved microRNA in plants, miR845, targets the tRNA primer-binding site (PBS) of long terminal repeat (LTR) retrotransposons in Arabidopsis pollen, and triggers the accumulation of 21-22-nucleotide (nt) small RNAs in a dose-dependent fashion via RNA polymerase IV. We show that these epigenetically activated small interfering RNAs (easiRNAs) mediate hybridization barriers between diploid seed parents and tetraploid pollen parents (the 'triploid block'), and that natural variation for miR845 may account for 'endosperm balance' allowing the formation of triploid seeds. Targeting of the PBS with small RNA is a common mechanism for transposon control in mammals and plants, and provides a uniquely sensitive means to monitor chromosome dosage and imprinting in the developing seed.

摘要

染色体剂量对动植物的生殖隔离和物种形成有很大的影响,但潜在的机制在很大程度上还不清楚。动物中的转座元件可以通过母系小分子 RNA 来调节杂种的形成,而植物中的小分子 RNA 被认为可以通过相邻的印迹基因来调节剂量反应。在这里,我们表明,在拟南芥花粉中,一种高度保守的植物 microRNA(miR845)靶向长末端重复(LTR)逆转座子的 tRNA 引物结合位点(PBS),并通过 RNA 聚合酶 IV 以剂量依赖的方式触发 21-22 核苷酸(nt)小分子 RNA 的积累。我们表明,这些表观遗传激活的小干扰 RNA(easiRNA)介导了二倍体种子亲本和四倍体花粉亲本之间的杂交障碍(“三倍体阻断”),并且 miR845 的自然变异可能解释了“胚乳平衡”,允许三倍体种子的形成。小分子 RNA 对 PBS 的靶向是哺乳动物和植物中转座子控制的一种常见机制,为监测发育中的种子中的染色体剂量和印迹提供了一种独特的敏感手段。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67c/5805582/db8102091315/nihms928433f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67c/5805582/f769e5de63a8/nihms928433f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67c/5805582/ded8fca088ee/nihms928433f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67c/5805582/cda4c3414e16/nihms928433f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67c/5805582/db8102091315/nihms928433f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67c/5805582/f769e5de63a8/nihms928433f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67c/5805582/ded8fca088ee/nihms928433f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67c/5805582/cda4c3414e16/nihms928433f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67c/5805582/db8102091315/nihms928433f4.jpg

相似文献

1
Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis.转座子衍生的小 RNA 被 miR845 触发,在拟南芥中介导基因组剂量反应。
Nat Genet. 2018 Feb;50(2):186-192. doi: 10.1038/s41588-017-0032-5. Epub 2018 Jan 15.
2
Paternal easiRNAs regulate parental genome dosage in Arabidopsis.父源 easiRNAs 调控拟南芥中亲本基因组的剂量。
Nat Genet. 2018 Feb;50(2):193-198. doi: 10.1038/s41588-017-0033-4. Epub 2018 Jan 15.
3
Paternally Acting Canonical RNA-Directed DNA Methylation Pathway Genes Sensitize Arabidopsis Endosperm to Paternal Genome Dosage.父源作用的经典 RNA 导向的 DNA 甲基化途径基因使拟南芥胚乳对父本基因组剂量敏感。
Plant Cell. 2019 Jul;31(7):1563-1578. doi: 10.1105/tpc.19.00047. Epub 2019 May 7.
4
Integrated Genome-Scale Analysis and Northern Blot Detection of Retrotransposon siRNAs Across Plant Species.跨植物物种的逆转座子 siRNA 的全基因组规模分析和 northern blot 检测。
Methods Mol Biol. 2020;2166:387-411. doi: 10.1007/978-1-0716-0712-1_23.
5
A highly specific microRNA-mediated mechanism silences LTR retrotransposons of strawberry.一种高度特异性的 microRNA 介导机制使草莓的 LTR 逆转座子沉默。
Plant J. 2016 Jan;85(1):70-82. doi: 10.1111/tpj.13090.
6
Pseudouridine guides germline small RNA transport and epigenetic inheritance.假尿苷引导种系小RNA转运和表观遗传继承。
Nat Struct Mol Biol. 2025 Feb;32(2):277-286. doi: 10.1038/s41594-024-01392-6. Epub 2024 Sep 6.
7
Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds.母源 siRNAs 作为调控拟南芥种子胚乳中亲本基因组失衡和基因表达的因子。
Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5529-34. doi: 10.1073/pnas.1203094109. Epub 2012 Mar 19.
8
Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing.通过深度测序揭示拟南芥缺磷时的小 RNA 介导反应。
Plant Physiol. 2009 Dec;151(4):2120-32. doi: 10.1104/pp.109.147280. Epub 2009 Oct 23.
9
Sequestration of a Transposon-Derived siRNA by a Target Mimic Imprinted Gene Induces Postzygotic Reproductive Isolation in Arabidopsis.转座子衍生的 siRNA 被靶基因模拟印记基因捕获诱导拟南芥合子后生殖隔离。
Dev Cell. 2018 Sep 24;46(6):696-705.e4. doi: 10.1016/j.devcel.2018.07.014. Epub 2018 Aug 16.
10
miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis.miRNAs 从拟南芥的转座子引发广泛的表观遗传激活的 siRNAs。
Nature. 2014 Apr 17;508(7496):411-5. doi: 10.1038/nature13069. Epub 2014 Mar 16.

引用本文的文献

1
Non-coding RNA-mediated regulation of seed endosperm development.非编码RNA介导的种子胚乳发育调控。
Front Plant Sci. 2025 Aug 8;16:1640284. doi: 10.3389/fpls.2025.1640284. eCollection 2025.
2
Long-read detection of transposable element mobilization in the soma of hypomethylated Arabidopsis thaliana individuals.低甲基化拟南芥个体体细胞中转座元件动员的长读长检测
Genome Biol. 2025 Jul 30;26(1):231. doi: 10.1186/s13059-025-03691-7.
3
Decoding hybridization barriers: the molecular and genetic orchestration of the triploid block in Arabidopsis thaliana.

本文引用的文献

1
LTR-Retrotransposon Control by tRNA-Derived Small RNAs.由tRNA衍生的小RNA对长末端重复序列逆转座子的调控
Cell. 2017 Jun 29;170(1):61-71.e11. doi: 10.1016/j.cell.2017.06.013.
2
Small RNA-mediated repair of UV-induced DNA lesions by the DNA DAMAGE-BINDING PROTEIN 2 and ARGONAUTE 1.DNA 损伤结合蛋白 2 和 Argonaute 1 通过小 RNA 介导修复紫外线诱导的 DNA 损伤。
Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2965-E2974. doi: 10.1073/pnas.1618834114. Epub 2017 Mar 21.
3
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues.
解码杂交障碍:拟南芥三倍体障碍的分子与遗传调控
BMC Plant Biol. 2025 Jul 15;25(1):913. doi: 10.1186/s12870-025-06844-9.
4
Molecular mechanisms and biological functions of active DNA demethylation in plants.植物中活性DNA去甲基化的分子机制及生物学功能
Epigenetics Chromatin. 2025 Jul 5;18(1):41. doi: 10.1186/s13072-025-00605-6.
5
Duckweed genomes and epigenomes underlie triploid hybridization and clonal reproduction.浮萍的基因组和表观基因组是三倍体杂交和克隆繁殖的基础。
Curr Biol. 2025 Apr 21;35(8):1828-1847.e9. doi: 10.1016/j.cub.2025.03.013. Epub 2025 Apr 1.
6
Epigenetics in the modern era of crop improvements.作物改良现代时代的表观遗传学。
Sci China Life Sci. 2025 Jan 8. doi: 10.1007/s11427-024-2784-3.
7
The biogenesis, regulation and functions of transitive siRNA in plants.植物中转录后小干扰RNA的生物合成、调控及功能
Acta Biochim Biophys Sin (Shanghai). 2024 Sep 29;57(1):131-147. doi: 10.3724/abbs.2024160.
8
Pseudouridine guides germline small RNA transport and epigenetic inheritance.假尿苷引导种系小RNA转运和表观遗传继承。
Nat Struct Mol Biol. 2025 Feb;32(2):277-286. doi: 10.1038/s41594-024-01392-6. Epub 2024 Sep 6.
9
Epigenetic gene regulation in plants and its potential applications in crop improvement.植物中的表观遗传基因调控及其在作物改良中的潜在应用。
Nat Rev Mol Cell Biol. 2025 Jan;26(1):51-67. doi: 10.1038/s41580-024-00769-1. Epub 2024 Aug 27.
10
ARID1 is required to regulate and reinforce H3K9me2 in sperm cells in Arabidopsis.ARID1 对于调节和加强拟南芥精子细胞中的 H3K9me2 是必需的。
Nat Commun. 2024 Aug 16;15(1):7078. doi: 10.1038/s41467-024-51513-4.
拟南芥雄性生殖系比体细胞组织表现出更强的CG甲基化维持能力。
Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15132-15137. doi: 10.1073/pnas.1619074114. Epub 2016 Dec 12.
4
DNA Methylation Influences the Expression of DICER-LIKE4 Isoforms, Which Encode Proteins of Alternative Localization and Function.DNA甲基化影响Dicer样4亚型的表达,这些亚型编码具有不同定位和功能的蛋白质。
Plant Cell. 2016 Nov;28(11):2786-2804. doi: 10.1105/tpc.16.00554. Epub 2016 Nov 14.
5
The Arabidopsis thaliana mobilome and its impact at the species level.拟南芥的移动元件及其在物种水平上的影响。
Elife. 2016 Jun 3;5:e15716. doi: 10.7554/eLife.15716.
6
Silencing in sperm cells is directed by RNA movement from the surrounding nurse cell.精子细胞中的沉默是由周围滋养细胞中 RNA 的运动所指导的。
Nat Plants. 2016 Mar 21;2:16030. doi: 10.1038/nplants.2016.30.
7
Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.高山紫菀基因组扩张与逆转座和对称 DNA 甲基化减少有关。
Nat Plants. 2015 Feb 2;1:14023. doi: 10.1038/nplants.2014.23.
8
Microsynteny and phylogenetic analysis of tandemly organised miRNA families across five members of Brassicaceae reveals complex retention and loss history.对十字花科五个成员中串联排列的 miRNA 家族进行微同线性和系统发育分析,揭示了其复杂的保留和丢失历史。
Plant Sci. 2016 Jun;247:35-48. doi: 10.1016/j.plantsci.2016.03.002. Epub 2016 Mar 10.
9
Fertilization Mechanisms in Flowering Plants.开花植物的受精机制
Curr Biol. 2016 Feb 8;26(3):R125-39. doi: 10.1016/j.cub.2015.12.032.
10
A highly specific microRNA-mediated mechanism silences LTR retrotransposons of strawberry.一种高度特异性的 microRNA 介导机制使草莓的 LTR 逆转座子沉默。
Plant J. 2016 Jan;85(1):70-82. doi: 10.1111/tpj.13090.